Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QTN46_RS10780 Genome accession   NZ_CP128501
Coordinates   2025533..2027311 (-) Length   592 a.a.
NCBI ID   WP_289394425.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123386     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2020533..2032311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN46_RS10750 (QTN46_10750) - 2020640..2021176 (-) 537 WP_013352511.1 DUF420 domain-containing protein -
  QTN46_RS10755 (QTN46_10755) - 2021322..2022104 (-) 783 WP_013352512.1 VLRF1 family aeRF1-type release factor -
  QTN46_RS10760 (QTN46_10760) - 2022301..2022798 (+) 498 WP_014470307.1 N-acetyltransferase -
  QTN46_RS10765 (QTN46_10765) - 2022864..2023841 (+) 978 WP_013352514.1 S66 peptidase family protein -
  QTN46_RS10770 (QTN46_10770) - 2023878..2024261 (-) 384 WP_289394462.1 hypothetical protein -
  QTN46_RS10775 (QTN46_10775) - 2024424..2025296 (-) 873 WP_013352516.1 3D domain-containing protein -
  QTN46_RS10780 (QTN46_10780) recQ 2025533..2027311 (-) 1779 WP_289394425.1 DNA helicase RecQ Machinery gene
  QTN46_RS10790 (QTN46_10790) - 2027822..2028448 (-) 627 WP_289394426.1 FMN-dependent NADH-azoreductase -
  QTN46_RS10795 (QTN46_10795) - 2028593..2029084 (-) 492 WP_065521107.1 TraR/DksA C4-type zinc finger protein -
  QTN46_RS10800 (QTN46_10800) - 2029167..2029547 (-) 381 WP_353131713.1 hypothetical protein -
  QTN46_RS10805 (QTN46_10805) - 2029640..2029873 (+) 234 WP_289394430.1 hypothetical protein -
  QTN46_RS10810 (QTN46_10810) - 2029860..2030342 (-) 483 WP_289394431.1 Hsp20/alpha crystallin family protein -
  QTN46_RS10815 (QTN46_10815) - 2030413..2030685 (+) 273 WP_014470303.1 hypothetical protein -
  QTN46_RS10820 (QTN46_10820) - 2030682..2030915 (+) 234 WP_013352524.1 hypothetical protein -
  QTN46_RS10825 (QTN46_10825) - 2030960..2031304 (-) 345 WP_003153783.1 PH domain-containing protein -
  QTN46_RS10830 (QTN46_10830) - 2031409..2031648 (-) 240 WP_232469738.1 hypothetical protein -
  QTN46_RS10835 (QTN46_10835) - 2031710..2031913 (-) 204 WP_007407979.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 66895.41 Da        Isoelectric Point: 6.3130

>NTDB_id=774037 QTN46_RS10780 WP_289394425.1 2025533..2027311(-) (recQ) [Bacillus amyloliquefaciens strain SRCM123386]
MLDKAQSLLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGTTIVISPLISLMKDQVDALEE
AGIAAAYINSTQTSRDIHERLTGLKEGAYRLFYITPERLTSPEFIHILQNITVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFNELKEPPVIIALTATATPEVHDDICKQLHIHKEHTVYTGFARENLTFKVVKGENKDRFIEQYLDRNKHEAGIIYAATR
KETDRIYEKLKRSGINAGRYHGGLADDDRKEQQERFLNDQIQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLDSECVLLFSPQDIMVQRFLIDQSAAGEEKQKQDLKKLRQMVDYCHTEDCLQRFILKYFGESEAEACGACGNCTD
TRTAHDVTKEAQMVLSCIIRMNERFGKTMVAQVLNGSKNKKVLENGFSSLSTYGIMKHQTTGEISDFIEFLISDEYIRMA
DGTFPTLMVTQKGRDVLLGKSAVARKEALEAAAVTENDELFEILRRLRKELAAEQGVPPFVVFSDQTLKEMSAKLPKTDH
DLLSVKGVGEQKRLKYGALFLEVIRNYVRETE

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=774037 QTN46_RS10780 WP_289394425.1 2025533..2027311(-) (recQ) [Bacillus amyloliquefaciens strain SRCM123386]
ATGCTGGATAAAGCCCAATCCCTTCTGGCGCATTATTTTGGCTACGACAGTCTTCGCGCGGGCCAAAAGCAGGCGATACA
ATCAGTTGCAGAGGAGAGAAAAAACACGGTCTGCATTATGCCGACGGGGGGCGGAAAATCAATCTGCTATCAGATTCCCG
CACTGCTGTTTGAAGGTACCACTATCGTTATTTCCCCTCTTATTTCCTTAATGAAAGATCAAGTCGACGCGCTTGAAGAA
GCGGGTATCGCGGCAGCTTATATTAACAGCACTCAGACAAGCCGGGACATTCATGAGCGACTGACCGGTTTGAAAGAAGG
GGCTTACCGGCTCTTTTACATAACACCGGAGCGTTTGACTTCTCCTGAATTCATTCACATCCTGCAGAATATTACGGTTC
CTCTTGTCGCCATAGACGAAGCTCACTGTATATCGCAATGGGGGCATGATTTCAGGCCGAGTTACCGGAATATCGAAATC
CTTTTTAATGAATTAAAAGAACCTCCTGTCATTATCGCGTTAACGGCGACGGCTACGCCTGAGGTTCATGATGATATCTG
CAAGCAGCTTCATATTCATAAAGAACATACTGTCTATACCGGTTTTGCCAGAGAGAATTTAACGTTCAAAGTAGTAAAGG
GCGAAAACAAAGACCGTTTTATCGAGCAGTACCTGGACAGAAATAAACACGAAGCCGGCATTATATATGCAGCGACCAGA
AAAGAAACCGACCGTATATATGAGAAATTAAAACGCAGCGGCATTAATGCCGGCCGTTATCACGGCGGATTGGCAGATGA
TGACAGAAAAGAGCAGCAGGAGCGGTTTCTTAACGATCAGATACAAGTGATGGTTGCCACGTCAGCTTTCGGAATGGGAA
TCGACAAGAGCAACATCAGATTCGTTCTCCACGCACAGATTCCAAAAGATATGGAGAGCTATTATCAGGAAGCCGGACGG
GCCGGGCGCGACGGTCTCGATAGCGAGTGCGTGCTCTTGTTTTCTCCGCAGGATATTATGGTGCAGCGCTTTTTAATAGA
CCAATCGGCAGCCGGAGAAGAAAAACAAAAGCAGGATCTCAAAAAACTGAGACAGATGGTGGATTACTGTCATACGGAAG
ATTGCCTGCAGCGGTTTATTCTGAAGTATTTCGGCGAGAGTGAGGCGGAAGCTTGCGGAGCATGCGGCAATTGCACTGAT
ACAAGGACAGCCCATGACGTCACAAAAGAAGCGCAGATGGTATTGTCATGTATTATCAGAATGAATGAGCGTTTCGGAAA
AACGATGGTCGCACAGGTGCTTAACGGGTCAAAAAATAAAAAAGTGCTGGAAAACGGCTTCAGCAGCCTGTCCACATACG
GCATTATGAAGCATCAAACAACAGGGGAAATCAGTGATTTTATCGAATTCCTGATTTCAGATGAATATATCAGAATGGCG
GACGGTACATTTCCGACGCTTATGGTCACACAAAAAGGCAGGGACGTTCTGCTCGGAAAGAGCGCAGTCGCGAGAAAAGA
AGCCTTAGAGGCCGCCGCCGTTACCGAAAACGATGAATTATTTGAGATTCTCCGGCGTCTCCGCAAAGAGCTCGCAGCGG
AACAAGGCGTGCCTCCATTTGTCGTGTTCTCAGATCAGACGTTAAAAGAAATGTCGGCGAAACTTCCGAAAACAGATCAT
GATCTTCTTTCCGTAAAAGGGGTAGGGGAACAAAAAAGATTGAAATACGGAGCGCTTTTTTTAGAAGTAATCCGAAATTA
TGTAAGAGAAACAGAGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(21-182)

RQC domain (RQC)

(404-508)

Helicase conserved C-terminal domain (Helicase_C)

(217-324)

HRDC domain (HRDC)

(519-584)

RecQ zinc-binding (RecQ_Zn_bind)

(336-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

82.601

100

0.826