Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PFY09_RS12315 Genome accession   NZ_CP115857
Coordinates   2732011..2733120 (-) Length   369 a.a.
NCBI ID   WP_271159898.1    Uniprot ID   -
Organism   Chryseobacterium gambrini strain PL22-1A     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2727011..2738120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFY09_RS12285 (PFY09_12285) - 2727310..2727453 (+) 144 WP_271159893.1 hypothetical protein -
  PFY09_RS12290 (PFY09_12290) - 2727601..2728572 (+) 972 WP_271159894.1 ion channel -
  PFY09_RS12295 (PFY09_12295) - 2728573..2729061 (+) 489 WP_271159895.1 YkgJ family cysteine cluster protein -
  PFY09_RS12300 (PFY09_12300) - 2729178..2729522 (+) 345 WP_271159896.1 hypothetical protein -
  PFY09_RS12305 (PFY09_12305) - 2729739..2730104 (-) 366 WP_271159897.1 iron chaperone -
  PFY09_RS12310 (PFY09_12310) gdhA 2730462..2731820 (-) 1359 WP_076394000.1 NADP-specific glutamate dehydrogenase -
  PFY09_RS12315 (PFY09_12315) dprA 2732011..2733120 (-) 1110 WP_271159898.1 DNA-processing protein DprA Machinery gene
  PFY09_RS12320 (PFY09_12320) - 2733156..2733926 (-) 771 WP_076394004.1 rhomboid family intramembrane serine protease -
  PFY09_RS12325 (PFY09_12325) - 2734000..2734140 (-) 141 WP_214587693.1 hypothetical protein -
  PFY09_RS12330 (PFY09_12330) - 2734196..2735125 (+) 930 WP_271159899.1 DUF3078 domain-containing protein -
  PFY09_RS12335 (PFY09_12335) - 2735371..2735880 (+) 510 WP_271159900.1 hypothetical protein -
  PFY09_RS12340 (PFY09_12340) - 2735877..2736224 (+) 348 WP_271159901.1 tRNA-binding protein -
  PFY09_RS12345 (PFY09_12345) - 2736300..2737004 (+) 705 WP_076394012.1 3'-5' exonuclease -
  PFY09_RS12350 (PFY09_12350) - 2737008..2737334 (+) 327 WP_076394014.1 SUF system Fe-S cluster assembly protein -
  PFY09_RS12355 (PFY09_12355) - 2737494..2737883 (+) 390 WP_271159902.1 hypothetical protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41252.89 Da        Isoelectric Point: 6.9681

>NTDB_id=774033 PFY09_RS12315 WP_271159898.1 2732011..2733120(-) (dprA) [Chryseobacterium gambrini strain PL22-1A]
MYSEEHLYSIALRECNLIGDINFYKLVRTFGSAKNAWENAKKEYKKLDGFGSKMISDIGNPAHLKFAENELKFCEANHIK
INLRHLHDLPKLLNECDDAPVILYQKGNYDDSKQKVSMVGTRNMTSYGKQFIEEFFQESSSGNFISVSGLALGVDKEVHE
QSILHQVSTVAVLAHGFHTLYPSKNKKLSEKILEEGGVLFTEFNSSRKPDRENFIQRNRIVAGISPATIVVETAFGGGSI
STATYANLYNREVYALPGKITDKQSQGCNHLIFQNKASAISTIKDLVENLGFNHPKGRTGELFPHSEISIQLTENQSEIF
RIIDENPQISLDDLADKTALASHKILPVILELELLGKVKSLSGRQFLAT

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=774033 PFY09_RS12315 WP_271159898.1 2732011..2733120(-) (dprA) [Chryseobacterium gambrini strain PL22-1A]
ATGTATTCTGAAGAACATCTTTATTCTATCGCTCTGCGCGAGTGTAATTTAATCGGGGATATCAATTTTTATAAGCTTGT
CCGTACTTTCGGAAGTGCCAAGAACGCTTGGGAAAACGCCAAAAAGGAATACAAAAAGCTGGACGGATTCGGATCTAAAA
TGATTTCAGACATCGGAAATCCTGCTCATCTGAAGTTTGCCGAAAATGAACTGAAGTTTTGTGAGGCAAACCATATCAAA
ATTAATCTCAGACATCTCCATGATCTTCCCAAACTCTTAAACGAATGCGATGATGCTCCTGTAATTCTCTATCAGAAAGG
GAATTATGATGATTCTAAGCAAAAAGTAAGCATGGTAGGAACAAGAAATATGACTTCCTACGGAAAGCAGTTTATTGAAG
AGTTTTTTCAGGAATCGTCTTCCGGTAATTTTATTTCGGTGAGCGGTCTGGCTTTAGGCGTCGATAAAGAAGTTCATGAG
CAGTCTATTCTTCATCAGGTTTCTACGGTTGCCGTTTTAGCCCATGGTTTTCACACATTGTATCCTTCAAAAAACAAAAA
ATTATCAGAAAAAATTCTTGAGGAAGGAGGGGTGTTATTTACAGAATTCAATTCTTCAAGAAAGCCGGATCGTGAAAATT
TCATCCAGAGAAACAGAATCGTAGCCGGAATTTCTCCTGCGACAATTGTGGTGGAAACTGCTTTTGGCGGAGGTTCAATC
AGCACTGCAACTTATGCAAATCTGTATAACCGTGAAGTGTATGCGCTTCCGGGAAAAATTACTGACAAGCAGAGCCAGGG
CTGTAATCATCTGATTTTTCAGAACAAAGCTTCGGCAATTTCCACGATAAAAGATCTGGTTGAAAACTTAGGATTTAATC
ATCCGAAGGGAAGAACTGGAGAATTATTTCCTCACAGTGAAATTTCAATCCAATTAACTGAAAATCAAAGTGAAATATTC
AGAATAATAGATGAGAATCCGCAGATATCTCTGGATGATCTTGCCGATAAAACAGCACTTGCCTCACACAAAATTTTACC
GGTAATTTTAGAATTGGAACTTTTGGGGAAGGTAAAATCACTTTCGGGGAGACAATTTTTAGCAACCTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(310-363)

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

54.67

98.645

0.539