Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   QTN45_RS11360 Genome accession   NZ_CP128500
Coordinates   2239531..2239893 (-) Length   120 a.a.
NCBI ID   WP_003154238.1    Uniprot ID   A0A150FA43
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2234531..2244893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS11335 (QTN45_11335) flhB 2236056..2237135 (-) 1080 WP_289412310.1 flagellar biosynthesis protein FlhB -
  QTN45_RS11340 (QTN45_11340) fliR 2237135..2237914 (-) 780 WP_289412312.1 flagellar biosynthetic protein FliR -
  QTN45_RS11345 (QTN45_11345) fliQ 2237921..2238190 (-) 270 WP_013352270.1 flagellar biosynthesis protein FliQ -
  QTN45_RS11350 (QTN45_11350) fliP 2238205..2238870 (-) 666 WP_013352269.1 flagellar type III secretion system pore protein FliP -
  QTN45_RS11355 (QTN45_11355) fliZ 2238863..2239516 (-) 654 WP_013352268.1 flagella biosynthesis regulatory protein FliZ -
  QTN45_RS11360 (QTN45_11360) pilH 2239531..2239893 (-) 363 WP_003154238.1 chemotaxis protein CheY Machinery gene
  QTN45_RS11365 (QTN45_11365) fliY 2239920..2241053 (-) 1134 WP_013352267.1 flagellar motor switch phosphatase FliY -
  QTN45_RS11370 (QTN45_11370) fliM 2241043..2242041 (-) 999 WP_013352266.1 flagellar motor switch protein FliM -
  QTN45_RS11375 (QTN45_11375) fliL 2242075..2242494 (-) 420 WP_013352265.1 flagellar basal body-associated protein FliL -
  QTN45_RS11380 (QTN45_11380) - 2242491..2242706 (-) 216 WP_013352264.1 flagellar FlbD family protein -
  QTN45_RS11385 (QTN45_11385) flgG 2242746..2243522 (-) 777 WP_013352263.1 flagellar basal body rod protein FlgG -
  QTN45_RS11390 (QTN45_11390) flgD 2243547..2243978 (-) 432 WP_013352262.1 flagellar hook assembly protein FlgD -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13209.53 Da        Isoelectric Point: 4.6805

>NTDB_id=773901 QTN45_RS11360 WP_003154238.1 2239531..2239893(-) (pilH) [Bacillus amyloliquefaciens strain SRCM123364]
MAHRILIVDDAAFMRMMIKDILVKNGFDVVAEASDGAQAVEKFKEHSPDLVTMDITMPEMDGITALKEIKQIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=773901 QTN45_RS11360 WP_003154238.1 2239531..2239893(-) (pilH) [Bacillus amyloliquefaciens strain SRCM123364]
ATGGCACACAGAATTTTAATTGTAGACGATGCAGCATTTATGAGAATGATGATCAAGGATATTTTAGTGAAGAACGGTTT
TGACGTTGTAGCTGAAGCTTCGGACGGAGCACAGGCAGTCGAAAAATTCAAAGAGCATTCACCCGACCTTGTGACAATGG
ATATTACAATGCCTGAAATGGACGGGATTACCGCATTAAAGGAAATTAAACAAATCGATCCGCAGGCGAAAATCATCATG
TGTTCGGCTATGGGGCAGCAGTCAATGGTTATTGACGCGATTCAAGCCGGCGCAAAAGACTTTATCGTGAAGCCATTCCA
AGCAGACCGCGTGCTTGAAGCCATTAATAAAACATTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150FA43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.983

98.333

0.383