Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QTN45_RS09665 Genome accession   NZ_CP128500
Coordinates   1812428..1814206 (+) Length   592 a.a.
NCBI ID   WP_013352517.1    Uniprot ID   A0A9P1NHR8
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1807428..1819206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS09610 (QTN45_09610) - 1807824..1808027 (+) 204 WP_007407979.1 DUF6501 family protein -
  QTN45_RS09615 (QTN45_09615) - 1808089..1808328 (+) 240 WP_232469738.1 hypothetical protein -
  QTN45_RS09620 (QTN45_09620) - 1808433..1808777 (+) 345 WP_003153783.1 PH domain-containing protein -
  QTN45_RS09625 (QTN45_09625) - 1808822..1809055 (-) 234 WP_013352524.1 hypothetical protein -
  QTN45_RS09630 (QTN45_09630) - 1809121..1809324 (-) 204 WP_013352523.1 hypothetical protein -
  QTN45_RS09635 (QTN45_09635) - 1809395..1809877 (+) 483 WP_013352522.1 Hsp20/alpha crystallin family protein -
  QTN45_RS09640 (QTN45_09640) - 1809864..1810097 (-) 234 WP_014471901.1 hypothetical protein -
  QTN45_RS09645 (QTN45_09645) - 1810190..1810570 (+) 381 WP_013352520.1 hypothetical protein -
  QTN45_RS09650 (QTN45_09650) - 1810653..1811144 (+) 492 WP_014470304.1 TraR/DksA C4-type zinc finger protein -
  QTN45_RS09655 (QTN45_09655) - 1811290..1811916 (+) 627 WP_289413250.1 FMN-dependent NADH-azoreductase -
  QTN45_RS09665 (QTN45_09665) recQ 1812428..1814206 (+) 1779 WP_013352517.1 DNA helicase RecQ Machinery gene
  QTN45_RS09670 (QTN45_09670) - 1814442..1815314 (+) 873 WP_013352516.1 3D domain-containing protein -
  QTN45_RS09675 (QTN45_09675) - 1815477..1815857 (+) 381 WP_013352515.1 hypothetical protein -
  QTN45_RS09680 (QTN45_09680) - 1815894..1816871 (-) 978 WP_013352514.1 S66 peptidase family protein -
  QTN45_RS09685 (QTN45_09685) - 1816937..1817434 (-) 498 WP_014470307.1 N-acetyltransferase -
  QTN45_RS09690 (QTN45_09690) - 1817631..1818411 (+) 781 Protein_1901 VLRF1 family aeRF1-type release factor -
  QTN45_RS09695 (QTN45_09695) - 1818557..1819093 (+) 537 WP_013352511.1 DUF420 domain-containing protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 66897.33 Da        Isoelectric Point: 6.2133

>NTDB_id=773889 QTN45_RS09665 WP_013352517.1 1812428..1814206(+) (recQ) [Bacillus amyloliquefaciens strain SRCM123364]
MLDKAQSLLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGTTIVISPLISLMKDQVDALEE
AGIAAAYINSTQTSRDIHERLTGLKEGAYRLFYITPERLTSPEFIHILQNITVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFNELKEPPVIIALTATATPEVHDDICKQLHIHKEHTVYTGFARENLTFKVAKGENKDRFIEQYLDRNKHEAGIIYAATR
KETDRIYEKLKRSGINAGRYHGGLADDDRKEQQERFLNDQIQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLDSECVLLFSPQDIMVQRFLIDQSAAGEEKQKQDLKKLRQMVDYCHTEDCLQRFILKYFGESEAEACGACGNCTD
TRTAHDVTKEAQMVLSCIIRMNERFGKTMVAQVLNGSKNKKVLENGFSSLSTYGIMKHQTTGEISDFIEFLISDEYIRMA
DGTFPTLMVTQKGRDVLLGKSAVARKEALEAAAVTENDELFEILRRLRKEIAAEQGVPPFVVFSDQTLKEMSAKLPKTDH
DLLSVKGVGEQKRLKYGALFLEEIRNYVRETE

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=773889 QTN45_RS09665 WP_013352517.1 1812428..1814206(+) (recQ) [Bacillus amyloliquefaciens strain SRCM123364]
ATGCTGGATAAAGCCCAATCCCTTCTGGCGCATTATTTTGGCTACGACAGTCTTCGCGCGGGCCAAAAGCAGGCGATACA
ATCAGTTGCAGAGGAGAGAAAAAACACGGTCTGCATTATGCCGACGGGGGGCGGAAAATCAATCTGCTATCAGATTCCCG
CACTTCTGTTTGAAGGTACCACTATCGTTATTTCCCCTCTTATTTCCTTAATGAAAGATCAAGTCGACGCGCTTGAAGAA
GCGGGTATCGCGGCAGCTTATATTAACAGCACTCAGACAAGCCGGGACATTCATGAGCGACTGACCGGTTTGAAAGAAGG
GGCTTACCGGCTCTTTTACATAACACCGGAGCGTTTGACTTCTCCTGAATTCATTCACATCCTGCAGAATATTACGGTTC
CTCTTGTCGCCATAGACGAAGCTCACTGTATATCGCAATGGGGGCATGATTTCAGGCCGAGTTACCGGAATATTGAAATC
CTTTTTAATGAATTAAAAGAACCTCCCGTCATTATCGCGTTAACGGCGACGGCTACGCCTGAGGTTCATGATGATATCTG
CAAGCAGCTTCATATTCATAAAGAACATACTGTCTATACCGGTTTTGCCAGAGAGAATTTAACGTTCAAAGTAGCAAAGG
GCGAAAACAAAGACCGTTTTATCGAGCAGTACCTGGACAGAAATAAACACGAAGCCGGCATTATATATGCAGCGACCAGA
AAAGAAACCGACCGTATATATGAGAAATTAAAACGCAGCGGCATTAATGCCGGCCGTTATCACGGCGGATTGGCAGATGA
TGACAGAAAAGAGCAGCAGGAGCGGTTTCTTAACGATCAGATACAAGTAATGGTTGCCACGTCAGCTTTCGGAATGGGAA
TCGACAAGAGCAACATCAGATTCGTTCTCCACGCACAGATTCCAAAAGATATGGAGAGCTATTATCAGGAAGCCGGACGG
GCCGGGCGCGACGGTCTCGATAGCGAGTGCGTGCTCTTGTTTTCTCCGCAGGATATTATGGTGCAACGCTTTTTAATAGA
CCAATCGGCAGCCGGAGAAGAAAAACAAAAGCAGGATCTCAAAAAACTGAGACAGATGGTGGATTACTGTCATACGGAAG
ATTGCCTGCAGCGGTTTATTCTGAAGTATTTCGGCGAGAGTGAGGCAGAAGCTTGCGGAGCATGCGGCAATTGCACTGAT
ACAAGGACAGCCCATGACGTCACAAAAGAAGCGCAGATGGTATTGTCATGTATTATCAGAATGAATGAGCGTTTCGGAAA
AACGATGGTCGCACAGGTGCTTAACGGGTCAAAAAATAAAAAAGTGCTGGAAAACGGCTTCAGCAGCCTGTCCACATACG
GCATTATGAAGCATCAAACAACAGGGGAAATCAGTGATTTTATCGAATTCCTGATTTCAGATGAATATATCAGAATGGCG
GACGGTACATTTCCGACGCTTATGGTCACACAAAAAGGCAGGGATGTTCTGCTTGGAAAGAGCGCAGTCGCGAGAAAAGA
AGCCTTAGAGGCCGCCGCCGTTACCGAAAACGATGAATTATTTGAGATTCTCCGGCGTCTCCGCAAAGAGATCGCAGCGG
AACAAGGCGTGCCTCCATTTGTCGTGTTCTCAGATCAGACGTTAAAAGAAATGTCGGCGAAACTTCCGAAAACAGATCAT
GATCTTCTTTCCGTAAAAGGGGTAGGGGAACAAAAAAGATTGAAATACGGAGCGCTTTTTTTAGAAGAAATCCGAAATTA
TGTAAGAGAAACAGAGTGA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(519-584)

DEAD/DEAH box helicase (DEAD)

(21-182)

RQC domain (RQC)

(404-508)

Helicase conserved C-terminal domain (Helicase_C)

(217-324)

RecQ zinc-binding (RecQ_Zn_bind)

(336-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NHR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

82.77

100

0.828