Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PBU98_RS15450 Genome accession   NZ_CP115821
Coordinates   3190011..3190640 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain E1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3185011..3195640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBU98_RS15435 helD 3185253..3187307 (-) 2055 WP_021561301.1 DNA helicase IV -
  PBU98_RS15440 yccF 3187430..3187876 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PBU98_RS15445 yccS 3187886..3190048 (+) 2163 WP_001550920.1 YccS family putative transporter -
  PBU98_RS15450 sxy/tfoX 3190011..3190640 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PBU98_RS15455 sulA 3190859..3191368 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  PBU98_RS15460 ompA 3191725..3192777 (+) 1053 WP_000750418.1 porin OmpA -
  PBU98_RS15465 matP 3192852..3193304 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PBU98_RS15470 ycbZ 3193490..3195250 (+) 1761 WP_000156479.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=773884 PBU98_RS15450 WP_000839153.1 3190011..3190640(-) (sxy/tfoX) [Escherichia coli strain E1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=773884 PBU98_RS15450 WP_000839153.1 3190011..3190640(-) (sxy/tfoX) [Escherichia coli strain E1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1