Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   QTN45_RS07770 Genome accession   NZ_CP128500
Coordinates   1488978..1489382 (+) Length   134 a.a.
NCBI ID   WP_289413132.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1483978..1494382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS07740 (QTN45_07740) - 1484697..1485647 (+) 951 WP_013352873.1 magnesium transporter CorA family protein -
  QTN45_RS07745 (QTN45_07745) comGA 1485841..1486911 (+) 1071 WP_013352872.1 competence type IV pilus ATPase ComGA Machinery gene
  QTN45_RS07750 (QTN45_07750) comGB 1486898..1487935 (+) 1038 WP_013352871.1 competence type IV pilus assembly protein ComGB Machinery gene
  QTN45_RS07755 (QTN45_07755) comGC 1487982..1488248 (+) 267 WP_044051905.1 competence type IV pilus major pilin ComGC Machinery gene
  QTN45_RS07760 (QTN45_07760) comGD 1488238..1488675 (+) 438 WP_013352869.1 competence type IV pilus minor pilin ComGD Machinery gene
  QTN45_RS07765 (QTN45_07765) comGE 1488659..1488973 (+) 315 WP_014470662.1 competence type IV pilus minor pilin ComGE Machinery gene
  QTN45_RS07770 (QTN45_07770) comGF 1488978..1489382 (+) 405 WP_289413132.1 competence type IV pilus minor pilin ComGF Machinery gene
  QTN45_RS07775 (QTN45_07775) comGG 1489384..1489761 (+) 378 WP_013352867.1 competence type IV pilus minor pilin ComGG Machinery gene
  QTN45_RS07780 (QTN45_07780) - 1489815..1489994 (+) 180 WP_013352866.1 YqzE family protein -
  QTN45_RS07785 (QTN45_07785) - 1490035..1490364 (-) 330 WP_013352865.1 DUF3889 domain-containing protein -
  QTN45_RS07790 (QTN45_07790) tapA 1490622..1491293 (+) 672 WP_013352864.1 amyloid fiber anchoring/assembly protein TapA -
  QTN45_RS07795 (QTN45_07795) sipW 1491265..1491849 (+) 585 WP_013352863.1 signal peptidase I SipW -
  QTN45_RS07800 (QTN45_07800) tasA 1491914..1492699 (+) 786 WP_013352862.1 biofilm matrix protein TasA -
  QTN45_RS07805 (QTN45_07805) sinR 1492747..1493082 (-) 336 WP_014470659.1 transcriptional regulator SinR Regulator
  QTN45_RS07810 (QTN45_07810) sinI 1493116..1493289 (-) 174 WP_013352860.1 anti-repressor SinI Regulator
  QTN45_RS07815 (QTN45_07815) - 1493469..1494263 (-) 795 WP_013352859.1 YqhG family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14435.69 Da        Isoelectric Point: 9.2414

>NTDB_id=773878 QTN45_RS07770 WP_289413132.1 1488978..1489382(+) (comGF) [Bacillus amyloliquefaciens strain SRCM123364]
MVSLAVCLFLSGTLSPILHLFLSGRTDNGGIDSREHHIAVQQIMNECKQAETVEPADGGRALTCRKTGGEEVRFEIYHTM
IRKRVNGKGHVPILHNAASLTADVKNGLILVGITSVTGKKKQTAIPVYSSLKGD

Nucleotide


Download         Length: 405 bp        

>NTDB_id=773878 QTN45_RS07770 WP_289413132.1 1488978..1489382(+) (comGF) [Bacillus amyloliquefaciens strain SRCM123364]
TTGGTCTCCTTGGCCGTCTGTCTCTTCTTATCAGGCACTCTGAGCCCGATTTTACATTTGTTTTTATCAGGCCGGACCGA
TAACGGAGGAATAGACAGCCGGGAGCATCATATTGCCGTTCAGCAGATCATGAATGAATGTAAACAGGCTGAGACTGTGG
AGCCTGCAGATGGCGGACGGGCGTTAACCTGCAGGAAAACAGGAGGCGAAGAAGTGCGTTTTGAAATCTATCACACGATG
ATAAGGAAAAGAGTGAACGGAAAAGGCCATGTGCCGATCCTGCATAACGCTGCTTCATTAACGGCTGATGTGAAAAACGG
CCTGATTTTAGTGGGAATCACAAGCGTTACAGGTAAAAAGAAGCAGACGGCCATTCCGGTTTACAGCTCTTTAAAAGGTG
ATTAA

Domains

Predicted by InterProScan.

Putative Competence protein ComGF (ComGF)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

47.619

94.03

0.448