Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PGN41_RS08740 Genome accession   NZ_CP115820
Coordinates   1859177..1861399 (+) Length   740 a.a.
NCBI ID   WP_271105397.1    Uniprot ID   -
Organism   Pseudomonas tohonis strain Q4-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1854177..1866399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGN41_RS08710 - 1854262..1854555 (-) 294 WP_263153351.1 phosphodiesterase -
  PGN41_RS08715 - 1854560..1855147 (-) 588 WP_263153352.1 PilZ domain-containing protein -
  PGN41_RS08720 - 1855244..1856494 (+) 1251 WP_271105395.1 lipoprotein-releasing ABC transporter permease subunit -
  PGN41_RS08725 lolD 1856496..1857179 (+) 684 WP_263154424.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  PGN41_RS08730 - 1857181..1858425 (+) 1245 WP_271105396.1 lipoprotein-releasing ABC transporter permease subunit -
  PGN41_RS08735 - 1858496..1859026 (-) 531 WP_263153355.1 DUF2062 domain-containing protein -
  PGN41_RS08740 comA 1859177..1861399 (+) 2223 WP_271105397.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PGN41_RS08745 exbB 1861472..1862107 (+) 636 WP_173173797.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PGN41_RS08750 - 1862104..1862547 (+) 444 WP_173173799.1 ExbD/TolR family protein -
  PGN41_RS08755 lpxK 1862547..1863551 (+) 1005 WP_271105398.1 tetraacyldisaccharide 4'-kinase -
  PGN41_RS08760 - 1863594..1863779 (+) 186 WP_111262773.1 Trm112 family protein -
  PGN41_RS08765 kdsB 1863779..1864543 (+) 765 WP_271105399.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PGN41_RS08770 - 1864543..1865001 (+) 459 WP_173173805.1 low molecular weight protein-tyrosine-phosphatase -
  PGN41_RS08775 murB 1864998..1866017 (+) 1020 WP_271105400.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 79008.40 Da        Isoelectric Point: 9.9639

>NTDB_id=773854 PGN41_RS08740 WP_271105397.1 1859177..1861399(+) (comA) [Pseudomonas tohonis strain Q4-3]
MTWALVALGGGLAAVRFMPALPPTAWLLAAAALGLALLAGRGRAPGLFLLGVAWGCCCAQWALDDRLDPSLDGETRWLEG
RVVGLPQRGNGVVRFELDDPQMPGAELPSRIRLSWYGGPQLRGGERWRLAVTLKRPRGLVNPHAFDYEAWLLARHIGASG
SVKAGKPLAPGNGPAAWRDRLRQGIEQVPAHGRNGGIAALVLGDGSGLVAADWRLLQDTGTVHLMVISGQHIALLAAVLY
GAVALLARLGLWPGRLPWLPCACALAFVGSLGYGLLAGFDVPVQRACLMTAIALLWRLRFRHLGVVRPLLVAFCVVLAAD
PLASLQAGFWLSFGAVALLILIFAGRMGVPPWWLSWWRAQWTMGLALSPLLLALALPISLSGPLANLVAVPWVSLVSVPL
SLLGTALQGVPWLGAGLLWLAGGSLELLFRLLAWIAAWVPAWQATAVPPWAWLLGMGGCLLLVLPAGVPVRVLGVALLLP
TLFPPVERPSWGKADIWLLDVGQGLSVLVRTREHALLYDTGARRGDFDMGERVVLPSLLGLGVRQLDQLLLSHADNDHAG
GAGAVLRGMPVARVVSGEPLRLPAALGAEACGNQAWEWDGVRLRTWRWEQARSGNDRSCVLSVEAHGERIHLTGDIGVQA
EAAWIASGEPLRADWLLAPHHGSASSSSAALIEAVSPRGALITRGSHNAFGHPHPSVVARYRASGVAIHDTAQSGALLIR
LGERDEVRGLRTQARFWREK

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=773854 PGN41_RS08740 WP_271105397.1 1859177..1861399(+) (comA) [Pseudomonas tohonis strain Q4-3]
ATGACGTGGGCGTTGGTGGCGCTGGGCGGTGGCCTGGCTGCGGTGCGGTTCATGCCGGCGTTGCCGCCGACCGCCTGGCT
GCTCGCGGCGGCGGCGCTGGGGCTGGCATTGCTGGCCGGGCGCGGGCGGGCGCCCGGACTGTTCCTGCTGGGGGTCGCCT
GGGGCTGCTGTTGTGCCCAATGGGCCCTGGATGATCGGCTGGACCCATCCCTCGATGGCGAGACCCGCTGGCTGGAGGGG
CGGGTCGTCGGGCTGCCGCAACGGGGCAACGGGGTGGTGCGCTTCGAGTTGGACGATCCGCAGATGCCAGGTGCCGAACT
GCCGTCGCGTATCCGCCTGTCCTGGTACGGCGGGCCACAGCTGCGCGGCGGGGAGCGCTGGCGCCTGGCCGTGACCCTCA
AGCGCCCGCGCGGCCTGGTCAATCCGCATGCCTTCGATTACGAGGCCTGGCTCCTTGCCCGGCACATAGGCGCCAGCGGT
TCGGTGAAGGCCGGCAAGCCGTTGGCGCCGGGCAATGGCCCCGCCGCCTGGCGTGACCGCCTGCGCCAGGGCATCGAGCA
GGTGCCGGCCCATGGGCGCAACGGCGGCATCGCGGCGCTGGTACTCGGCGACGGCTCGGGACTGGTCGCTGCGGATTGGC
GCTTGCTGCAGGACACGGGGACCGTGCACCTGATGGTGATCTCCGGCCAGCACATCGCCTTGCTCGCCGCTGTGCTCTAC
GGCGCCGTCGCGCTGCTGGCGCGGCTCGGGCTCTGGCCCGGACGCCTGCCCTGGTTGCCCTGCGCCTGTGCCCTGGCGTT
CGTCGGATCACTGGGCTACGGCTTGCTGGCCGGCTTCGACGTGCCGGTGCAGCGCGCTTGCCTGATGACCGCCATCGCGC
TGCTCTGGCGCTTGCGTTTCCGCCACCTCGGGGTGGTCCGCCCGTTGCTGGTGGCCTTCTGCGTGGTGCTGGCGGCGGAT
CCGCTGGCCTCCCTGCAGGCAGGATTCTGGTTGTCCTTCGGCGCCGTGGCGTTGCTCATCCTGATCTTCGCCGGGCGGAT
GGGCGTGCCGCCCTGGTGGCTCAGCTGGTGGCGCGCGCAATGGACCATGGGGCTGGCGCTGTCACCCTTGCTGCTGGCGT
TGGCGCTGCCCATCAGCCTGAGTGGCCCGCTGGCCAACCTGGTCGCCGTGCCCTGGGTCAGCCTGGTCTCGGTGCCGCTG
TCCCTGCTCGGGACTGCGCTGCAGGGCGTGCCCTGGCTGGGCGCAGGGCTGCTGTGGCTGGCCGGCGGTTCGCTGGAGCT
GTTGTTCCGGCTGCTGGCCTGGATCGCCGCGTGGGTTCCGGCCTGGCAGGCGACGGCCGTTCCCCCATGGGCCTGGCTGC
TGGGCATGGGCGGGTGCCTGTTGCTGGTTCTTCCGGCGGGCGTGCCGGTGCGCGTCCTGGGCGTGGCCCTGCTGTTGCCA
ACGTTGTTTCCTCCCGTGGAGCGGCCGTCCTGGGGAAAGGCGGACATCTGGCTGCTGGATGTCGGGCAGGGGCTGTCGGT
GCTGGTGCGGACCCGGGAGCACGCGCTGCTCTACGACACGGGCGCCCGGCGCGGTGACTTCGACATGGGCGAGCGGGTGG
TGCTGCCGAGCCTGCTGGGGCTGGGTGTGCGGCAGCTGGACCAGTTGCTGCTCAGCCATGCCGACAACGACCACGCCGGC
GGTGCCGGAGCGGTACTGCGCGGCATGCCGGTGGCGCGGGTGGTCAGCGGTGAGCCGCTGCGCCTGCCGGCTGCGCTGGG
CGCCGAGGCCTGTGGCAACCAAGCGTGGGAGTGGGACGGCGTGCGCCTGCGTACCTGGCGCTGGGAGCAGGCGCGCAGTG
GCAACGACCGGTCCTGTGTGCTCAGCGTCGAGGCGCACGGCGAGCGCATCCACCTGACCGGCGACATCGGTGTCCAGGCC
GAGGCCGCCTGGATCGCCAGCGGTGAACCCCTGCGCGCCGACTGGCTGCTGGCACCGCACCACGGCAGTGCCAGCTCTTC
CTCCGCGGCGCTGATCGAGGCGGTGTCGCCCCGTGGTGCGTTGATCACCCGGGGCAGCCACAACGCCTTCGGCCATCCGC
ATCCGTCCGTCGTCGCCCGCTACCGTGCCTCTGGCGTCGCGATCCACGACACGGCGCAGTCCGGTGCGCTGCTGATCCGT
CTCGGCGAACGTGACGAGGTGCGTGGACTGCGGACCCAGGCACGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(19-165)

Metallo-beta-lactamase superfamily (Lactamase_B)

(500-682)

Competence protein (Competence)

(200-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.306

97.297

0.626
  comA Ralstonia pseudosolanacearum GMI1000

36.247

100

0.381