Detailed information
Bioinformatically predicted
Overview
| Name | pilV | Type | Machinery gene |
| Locus tag | QUE39_RS06230 | Genome accession | NZ_AP025540 |
| Coordinates | 1164026..1164394 (+) | Length | 122 a.a. |
| NCBI ID | WP_011228527.1 | Uniprot ID | Q5SIZ3 |
| Organism | Thermus thermophilus strain HB8_001 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1159026..1169394
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE39_RS06200 (TthHB8_12030) | - | 1159045..1160025 (-) | 981 | WP_011228521.1 | YpdA family putative bacillithiol disulfide reductase | - |
| QUE39_RS06205 (TthHB8_12040) | pilA/pilA1 | 1160183..1160653 (+) | 471 | WP_011228522.1 | GspH/FimT family protein | Machinery gene |
| QUE39_RS06210 (TthHB8_12050) | - | 1160738..1161175 (+) | 438 | WP_231834457.1 | GspH/FimT family protein | - |
| QUE39_RS06215 (TthHB8_12060) | - | 1161201..1161533 (+) | 333 | WP_224065211.1 | prepilin | - |
| QUE39_RS06220 (TthHB8_12070) | - | 1161530..1162240 (+) | 711 | WP_011228525.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| QUE39_RS06225 (TthHB8_12080) | - | 1162254..1163753 (+) | 1500 | WP_011228526.1 | pilus assembly PilX N-terminal domain-containing protein | - |
| QUE39_RS06230 (TthHB8_12090) | pilV | 1164026..1164394 (+) | 369 | WP_011228527.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| QUE39_RS06235 (TthHB8_12100) | - | 1164453..1164824 (+) | 372 | WP_011228528.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| QUE39_RS06240 (TthHB8_12110) | - | 1165017..1165778 (+) | 762 | WP_011228529.1 | DUF1640 domain-containing protein | - |
| QUE39_RS06245 | - | 1165854..1166391 (+) | 538 | Protein_1210 | Uma2 family endonuclease | - |
| QUE39_RS06250 (TthHB8_12130) | - | 1166388..1166945 (-) | 558 | WP_011228531.1 | Uma2 family endonuclease | - |
| QUE39_RS06255 (TthHB8_12140) | - | 1166964..1167620 (-) | 657 | WP_011228532.1 | chromosome segregation protein ScpA | - |
| QUE39_RS06260 (TthHB8_12150) | trpS | 1167617..1168630 (-) | 1014 | WP_011173293.1 | tryptophan--tRNA ligase | - |
Sequence
Protein
Download Length: 122 a.a. Molecular weight: 12854.57 Da Isoelectric Point: 6.1490
>NTDB_id=77385 QUE39_RS06230 WP_011228527.1 1164026..1164394(+) (pilV) [Thermus thermophilus strain HB8_001]
MRNAKGFTLIELLIVIAIIAILAAVLIPNLLNARRNANTTAAQAYVRNVATAVEAERDPTTGALPQLPQACDQFVANPPA
SVTQCNVTANNDGVNFTVTAQLTGARYGSVSFDSSTGQFSFQ
MRNAKGFTLIELLIVIAIIAILAAVLIPNLLNARRNANTTAAQAYVRNVATAVEAERDPTTGALPQLPQACDQFVANPPA
SVTQCNVTANNDGVNFTVTAQLTGARYGSVSFDSSTGQFSFQ
Nucleotide
Download Length: 369 bp
>NTDB_id=77385 QUE39_RS06230 WP_011228527.1 1164026..1164394(+) (pilV) [Thermus thermophilus strain HB8_001]
ATGCGGAACGCGAAAGGCTTCACCCTGATTGAGCTCCTGATCGTCATCGCCATCATCGCCATCCTGGCTGCGGTTCTCAT
TCCGAACCTTCTCAACGCTCGGAGGAACGCCAACACCACGGCCGCCCAGGCCTACGTGCGCAACGTGGCTACGGCGGTGG
AGGCCGAAAGGGATCCCACCACTGGAGCGTTGCCCCAGCTTCCTCAGGCCTGTGACCAATTCGTCGCAAACCCCCCTGCC
TCGGTCACGCAATGCAACGTTACAGCTAACAACGACGGCGTCAACTTCACGGTTACCGCCCAATTGACCGGGGCCCGGTA
CGGTTCTGTCTCGTTTGACAGCTCCACCGGGCAGTTTAGCTTCCAGTAA
ATGCGGAACGCGAAAGGCTTCACCCTGATTGAGCTCCTGATCGTCATCGCCATCATCGCCATCCTGGCTGCGGTTCTCAT
TCCGAACCTTCTCAACGCTCGGAGGAACGCCAACACCACGGCCGCCCAGGCCTACGTGCGCAACGTGGCTACGGCGGTGG
AGGCCGAAAGGGATCCCACCACTGGAGCGTTGCCCCAGCTTCCTCAGGCCTGTGACCAATTCGTCGCAAACCCCCCTGCC
TCGGTCACGCAATGCAACGTTACAGCTAACAACGACGGCGTCAACTTCACGGTTACCGCCCAATTGACCGGGGCCCGGTA
CGGTTCTGTCTCGTTTGACAGCTCCACCGGGCAGTTTAGCTTCCAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilV | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.818 |
90.164 |
0.467 |