Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   QTN45_RS03765 Genome accession   NZ_CP128500
Coordinates   733162..735477 (+) Length   771 a.a.
NCBI ID   WP_289412840.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 728162..740477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS03745 (QTN45_03745) - 730260..730931 (+) 672 WP_013353606.1 DsbA family protein -
  QTN45_RS03750 (QTN45_03750) - 730921..731340 (+) 420 WP_013353605.1 disulfide oxidoreductase -
  QTN45_RS03755 (QTN45_03755) - 731374..732174 (-) 801 WP_013353604.1 zinc-dependent metalloprotease -
  QTN45_RS03760 (QTN45_03760) - 732400..733008 (+) 609 WP_013353603.1 trimeric intracellular cation channel family protein -
  QTN45_RS03765 (QTN45_03765) helD 733162..735477 (+) 2316 WP_289412840.1 RNA polymerase recycling motor HelD Machinery gene
  QTN45_RS03770 (QTN45_03770) - 735652..737460 (+) 1809 WP_014471011.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  QTN45_RS03775 (QTN45_03775) cysI 737488..739203 (+) 1716 WP_014471010.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 88288.34 Da        Isoelectric Point: 5.9623

>NTDB_id=773843 QTN45_RS03765 WP_289412840.1 733162..735477(+) (helD) [Bacillus amyloliquefaciens strain SRCM123364]
MAKRDEEWKEEQERINFVMKELDQKQTRLEASSGGLKQDIVGLRKTFWDDVTVNLDDAHEAAETFSSIKQQAEMLSERER
THRLQYRQLQKIQKLKASPYFGRVDFTEKGESSAEQIYIGLTSLMDETNEHFLIYDWRAPISSLYYQYSPGKARYEVPEE
TIEGDITLKRQFIIKNGTLKAMFNTDMTIGDEMLQEVLSGHSGQQMKNIVSTIQKEQNEIIRDEKSKYLIVQGAAGSGKT
SAALQRAAYLLYRGRGVLDARQIVLFSPNILFNSYVSAVLPELGEENMEQATFQEYIARRLGRKFECESPYEQLEYCLTE
QNQDALSVRLTAIAYKASSAFRTMIDRYAGSLSVSGLMCKQISFRGEILISKERIEDYFYSLDQQLPIPNRAELTAEWLL
AEISALEKKERKKEWVLQESELLDKEDYAQVYQKLKKQAADDEPAFDDHQREQRLLGAIIVGKAFKPIKQAVRQLGFLDI
KRMYLRLFSDWGSYETPDQWQSIGALTRKAFAEQSLPYEDAAPYLYLQDLIEGKRKNTQMKHVFIDEAQDYSPFQLTYIQ
NIFPAAKMTVLGDVSQSIYAHTITGPSSLAGCFRNGAEKYVSLKRTYRSTRQIVEFTKALLDDGDDIEPFNRNGEKPRLL
RADTEKARQEQLTETIRELRQKGWETIAVICKTAAEAKKVFQAVSVASDVRLINKENQPFQKGVCVIPVYLAKGIEFDAV
IVADASVTQYNSQHDRKLLYTACTRAMHHLTVLSPGETSPFIKEVPAGLFV

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=773843 QTN45_RS03765 WP_289412840.1 733162..735477(+) (helD) [Bacillus amyloliquefaciens strain SRCM123364]
ATGGCAAAACGTGATGAAGAATGGAAAGAAGAGCAGGAAAGAATCAATTTTGTCATGAAGGAACTGGATCAGAAACAAAC
GCGTCTTGAAGCATCATCGGGCGGATTGAAGCAGGATATTGTCGGTTTGAGAAAAACGTTTTGGGATGATGTCACGGTTA
ATTTGGATGATGCCCATGAAGCGGCGGAAACATTTTCAAGCATTAAACAGCAGGCTGAAATGCTTTCAGAACGTGAACGG
ACGCATCGGCTTCAATACCGGCAGCTTCAAAAAATCCAAAAGCTGAAAGCCTCTCCTTACTTCGGCCGTGTCGATTTTAC
GGAAAAAGGGGAGTCCTCTGCCGAGCAGATTTATATCGGGCTGACTTCTTTAATGGATGAAACCAATGAGCATTTTCTCA
TTTACGATTGGCGTGCGCCCATTTCATCTCTTTACTATCAATATTCCCCGGGAAAAGCCCGCTATGAAGTTCCGGAAGAA
ACGATAGAAGGGGACATCACACTGAAGCGGCAGTTTATCATTAAAAACGGGACGCTTAAAGCGATGTTTAACACGGATAT
GACGATTGGTGACGAAATGCTGCAAGAGGTGCTGAGCGGCCATTCCGGCCAGCAGATGAAAAACATCGTGTCAACCATCC
AAAAAGAACAGAATGAAATAATTCGTGATGAAAAAAGCAAATATCTCATCGTTCAGGGAGCCGCCGGAAGCGGGAAAACA
TCCGCGGCGCTTCAGCGGGCCGCTTACTTGCTGTACCGCGGGCGCGGTGTGCTTGACGCCCGTCAGATAGTGCTGTTTTC
TCCGAACATTTTGTTCAACAGTTACGTTTCCGCCGTATTGCCGGAACTGGGAGAAGAAAATATGGAACAGGCCACGTTTC
AGGAATATATCGCCCGCCGGCTCGGACGAAAGTTTGAATGTGAAAGCCCGTACGAACAGCTCGAATATTGCCTGACCGAG
CAGAATCAGGACGCGCTTTCCGTAAGGCTCACAGCCATCGCCTACAAAGCGTCATCAGCTTTCCGGACCATGATTGACCG
TTACGCCGGATCGCTTTCCGTCTCCGGCCTGATGTGTAAACAGATCAGCTTCCGGGGAGAAATACTGATTTCAAAAGAGC
GGATTGAAGATTACTTTTACTCACTTGATCAGCAGCTGCCGATTCCGAACAGAGCGGAGCTGACGGCGGAATGGCTTCTT
GCGGAAATCAGCGCACTCGAAAAAAAGGAACGTAAGAAGGAATGGGTTCTGCAGGAGAGTGAGCTGCTCGATAAGGAAGA
CTATGCTCAGGTTTATCAAAAACTCAAGAAGCAAGCGGCGGATGATGAACCTGCTTTTGACGACCATCAGCGCGAACAGC
GGCTGCTTGGCGCCATCATTGTGGGAAAAGCTTTTAAGCCGATTAAGCAGGCCGTCAGACAGCTTGGCTTTCTCGATATA
AAACGGATGTATCTCCGGCTGTTTTCAGACTGGGGATCATATGAAACGCCTGATCAATGGCAGAGCATCGGCGCTTTGAC
CCGGAAAGCGTTCGCAGAGCAGTCACTCCCATATGAAGATGCAGCTCCGTATCTTTATTTGCAGGATCTAATAGAAGGAA
AAAGAAAAAACACACAAATGAAGCACGTATTCATTGATGAAGCGCAGGATTATTCCCCATTTCAGCTGACGTATATTCAA
AACATCTTCCCAGCCGCGAAGATGACGGTGCTCGGTGATGTCAGCCAGTCGATTTATGCCCACACCATCACGGGCCCTTC
TTCACTTGCCGGCTGCTTTCGCAACGGCGCAGAAAAGTATGTCAGCCTGAAGCGGACTTACAGGTCGACGCGGCAGATTG
TTGAATTTACGAAAGCGCTGCTCGATGACGGTGATGACATTGAGCCTTTTAACCGGAACGGAGAAAAACCGCGTCTCCTG
CGGGCGGATACAGAAAAAGCGCGGCAGGAGCAATTGACGGAAACAATACGGGAGCTCAGGCAAAAAGGCTGGGAGACGAT
CGCCGTCATCTGCAAAACTGCCGCGGAAGCAAAAAAAGTATTTCAGGCGGTCAGCGTCGCAAGCGATGTCCGTTTGATCA
ATAAAGAAAATCAGCCTTTCCAAAAAGGGGTATGCGTCATTCCCGTGTATTTGGCAAAAGGCATTGAGTTTGACGCCGTC
ATTGTTGCTGACGCCTCTGTTACCCAGTACAATAGCCAGCATGACCGCAAGCTGTTATATACGGCCTGCACGCGGGCGAT
GCATCATCTGACCGTGCTGTCTCCCGGAGAAACTTCTCCTTTTATAAAAGAAGTGCCCGCCGGCTTATTCGTGTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(704-752)

AAA domain (AAA_19)

(217-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

66.623

99.87

0.665