Detailed information NTG0773825

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: PAK23_RS18890
• Genome accession: NZ_CP115817
• Coordinates: 4010012..4011334 (-)
• Length: 440 a.a.
• NCBI ID: WP_264147220.1
• Uniprot ID: -
• Organism: Pseudomonas mendocina strain GD22SC3150TT
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4005012..4016334

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PAK23_RS18855	thiS	4005034..4005234 (-)	201	WP_264147226.1	sulfur carrier protein ThiS	-
PAK23_RS18860	-	4005337..4005708 (-)	372	WP_264147225.1	DUF423 domain-containing protein	-
PAK23_RS18865	mtgA	4005928..4006656 (+)	729	WP_276487667.1	monofunctional biosynthetic peptidoglycan transglycosylase	-
PAK23_RS18870	-	4006663..4007271 (-)	609	WP_276487668.1	hypothetical protein	-
PAK23_RS18875	rpoH	4007334..4008188 (-)	855	WP_264147222.1	RNA polymerase sigma factor RpoH	-
PAK23_RS18880	ftsX	4008331..4009347 (-)	1017	WP_276487669.1	permease-like cell division protein FtsX	-
PAK23_RS18885	ftsE	4009347..4010015 (-)	669	WP_013717545.1	cell division ATP-binding protein FtsE	-
PAK23_RS18890	pilA	4010012..4011334 (-)	1323	WP_264147220.1	signal recognition particle-docking protein FtsY	Machinery gene
PAK23_RS18895	ltrA	4011541..4013274 (-)	1734	WP_276487670.1	group II intron reverse transcriptase/maturase	-
PAK23_RS18900	-	4014421..4015794 (+)	1374	WP_276487671.1	pitrilysin family protein	-

Sequence

Protein

• Length: 440 a.a.
• Molecular weight: 46001.54 Da
• Isoelectric Point: 4.8663

>NTDB_id=773825 PAK23_RS18890 WP_264147220.1 4010012..4011334(-) (pilA) [Pseudomonas mendocina strain GD22SC3150TT]
MFGSNDDKKSPAEAGAQTPPVTEEKKSLFSWWRKKPAETVAEPAQPAEQAAVPAPGEPSTPEPVPEAAPTVESQVADAMP
APAPQPAPPVAETPAAAPVPAEPPAVAEPVIEAAAVAAAPAPAAASATQDKPGFFARLKQGLSKTSASLGEGMASLFLGK
KAIDDDLLDDLETRLLTADVGVEATTTIIGNLTKRVARKELADSGALYKALQEELVGLLKPVEQPLVIDGAKQPYVILVV
GVNGVGKTTTIGKLAKKLQQDGKKVMLAAGDTFRAAAVEQLQVWGERNNIAVIAQHTGADSASVIFDAVQAAKSRGIDVL
IADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAISQAKQFNQTVNLTGLALTKLDGTAKGGVIFA
LAKQFGLPIRYIGVGEGIDDLRPFEAQAFVQALFEERERG

Nucleotide

• Length: 1323 bp

>NTDB_id=773825 PAK23_RS18890 WP_264147220.1 4010012..4011334(-) (pilA) [Pseudomonas mendocina strain GD22SC3150TT]
ATGTTTGGTTCCAATGACGACAAGAAGTCGCCGGCCGAGGCTGGCGCGCAGACCCCGCCTGTGACCGAAGAAAAGAAATC
CCTGTTCAGCTGGTGGCGCAAGAAACCGGCAGAGACCGTTGCCGAGCCGGCACAGCCCGCCGAGCAGGCTGCTGTCCCGG
CACCTGGCGAGCCGTCGACGCCTGAGCCTGTCCCCGAAGCCGCGCCGACAGTCGAGTCGCAAGTGGCCGACGCCATGCCT
GCTCCGGCCCCGCAGCCTGCGCCGCCAGTCGCCGAAACCCCGGCTGCCGCACCTGTGCCGGCCGAGCCGCCAGCCGTAGC
CGAGCCCGTCATCGAGGCCGCTGCGGTAGCTGCTGCGCCAGCACCTGCCGCCGCATCGGCCACGCAGGACAAGCCCGGCT
TCTTCGCCCGCCTCAAGCAGGGCCTGTCGAAGACCAGCGCCAGCCTCGGTGAAGGCATGGCCAGCCTGTTCCTCGGCAAG
AAAGCCATCGACGACGACCTGCTCGACGATCTGGAAACCCGCCTGCTGACGGCCGACGTCGGCGTTGAAGCGACCACCAC
CATCATCGGCAACCTGACCAAGCGCGTGGCGCGCAAGGAACTGGCCGACAGCGGCGCGTTGTACAAGGCTCTGCAGGAAG
AGCTGGTCGGCCTGCTCAAGCCGGTCGAGCAGCCGCTGGTCATCGACGGCGCCAAGCAGCCCTACGTGATCCTCGTGGTC
GGCGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCCAAGAAGCTGCAGCAGGACGGCAAGAAGGTCATGCT
CGCCGCCGGCGATACCTTCCGCGCCGCGGCCGTGGAACAGCTGCAGGTCTGGGGCGAGCGCAACAACATCGCGGTCATCG
CGCAGCACACCGGCGCCGATTCGGCCTCGGTGATCTTCGATGCGGTGCAGGCTGCCAAGTCCCGTGGCATCGATGTGCTG
ATCGCTGATACCGCCGGGCGCCTGCACACCAAGGACAACCTGATGGAAGAGCTGAAGAAGGTCCGTCGGGTGATCGGCAA
GCTGGACGAGACGGCTCCGCACGAAGTGTTGCTGGTGCTCGACGCCGGTACCGGCCAGAACGCCATCAGCCAGGCCAAGC
AGTTCAACCAGACGGTGAACCTCACCGGCCTGGCGCTGACCAAACTCGACGGCACCGCCAAGGGCGGTGTCATCTTCGCC
CTGGCCAAGCAGTTCGGCCTGCCGATTCGCTACATCGGCGTGGGCGAGGGCATCGATGACCTGCGTCCGTTCGAGGCGCA
GGCTTTCGTCCAGGCACTCTTCGAGGAGCGTGAGCGCGGATGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (235-434)

• SRP54-type protein, helical bundle domain (SRP54_N) (149-215)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	50.711	95.909	0.486