Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PAF20_RS12365 Genome accession   NZ_CP115775
Coordinates   2469190..2470554 (+) Length   454 a.a.
NCBI ID   WP_271070934.1    Uniprot ID   -
Organism   Paracoccus albus strain SCSIO 80058     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2464190..2475554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAF20_RS12350 (PAF20_12350) - 2465227..2466969 (+) 1743 WP_271070931.1 chloride channel protein -
  PAF20_RS12355 (PAF20_12355) - 2466966..2467646 (-) 681 WP_271070932.1 ABC transporter ATP-binding protein -
  PAF20_RS12360 (PAF20_12360) - 2467639..2468952 (-) 1314 WP_271070933.1 lipoprotein-releasing ABC transporter permease subunit -
  PAF20_RS12365 (PAF20_12365) radA 2469190..2470554 (+) 1365 WP_271070934.1 DNA repair protein RadA Machinery gene
  PAF20_RS12370 (PAF20_12370) - 2470597..2471253 (+) 657 WP_271070935.1 CvpA family protein -
  PAF20_RS12375 (PAF20_12375) purF 2471388..2472875 (+) 1488 WP_271070936.1 amidophosphoribosyltransferase -
  PAF20_RS12380 (PAF20_12380) - 2472892..2473245 (-) 354 WP_271070937.1 cell division protein ZapA -
  PAF20_RS12385 (PAF20_12385) - 2473249..2473713 (-) 465 WP_271070938.1 hypothetical protein -
  PAF20_RS12390 (PAF20_12390) - 2473828..2475549 (-) 1722 WP_271070939.1 BCCT family transporter -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 47282.07 Da        Isoelectric Point: 6.0135

>NTDB_id=773715 PAF20_RS12365 WP_271070934.1 2469190..2470554(+) (radA) [Paracoccus albus strain SCSIO 80058]
MAKPVTIFTCQECGATHKKWAGRCDACGAWNSIVEEAPLSQGPRRGLGAVKGKTVPLSALSTEEPPPPRAESGMAEFDRV
LGGGLVPGSAVLVGGDPGIGKSTLLLQAAAAFATRGQSAIYISGEEASAQVRMRAQRLGLAEAPVRLGSETALRDILTTL
DAERPDLAVIDSIQTLWSDTVEAAPGSVSQVRASAHELVTFAKKRGVAVVIVGHVTKEGQIAGPRVVEHMVDTVLYFEGE
RGHQFRILRAVKNRFGPADEIGVFEMTGGGLAEVANPSALFLSERGQPSPGSAVFAGIEGTRPVLTEIQALVAPSTLASP
RRTVVGLDSGRVSTILAVLEARCGIPFAGLDVFLNVAGGMRVQEPAADLAIAAALLSAREDSALPADCVTFGEISLSGAL
RPVAQAENRLKEAQKLGFSHAIIPASSKIEGSRDMRLDRIADLTSFVGEVFGAG

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=773715 PAF20_RS12365 WP_271070934.1 2469190..2470554(+) (radA) [Paracoccus albus strain SCSIO 80058]
ATGGCAAAACCCGTTACCATCTTCACCTGTCAGGAATGCGGCGCGACCCATAAGAAATGGGCCGGACGCTGTGACGCCTG
CGGGGCCTGGAACTCGATCGTCGAAGAAGCACCTTTGTCCCAGGGGCCAAGGCGCGGGCTTGGTGCTGTGAAGGGCAAGA
CCGTGCCTTTGAGCGCATTGTCCACCGAAGAGCCGCCCCCGCCGCGTGCCGAAAGCGGGATGGCGGAGTTTGACCGGGTG
CTGGGCGGCGGTCTGGTGCCGGGATCGGCCGTTCTGGTGGGCGGCGATCCGGGTATCGGGAAATCGACCTTGCTGTTACA
GGCCGCGGCTGCGTTTGCGACGCGGGGGCAGAGCGCGATCTATATCTCTGGCGAGGAAGCCTCGGCTCAGGTTCGGATGC
GGGCGCAGCGGTTGGGGCTGGCAGAGGCGCCTGTCAGGCTGGGCTCAGAGACCGCGCTGCGCGATATTCTGACCACGCTG
GATGCCGAGCGGCCCGATCTTGCGGTGATCGATTCCATCCAGACGCTGTGGTCGGACACGGTGGAGGCAGCACCTGGCAG
CGTATCGCAGGTTCGGGCCTCTGCCCATGAGTTGGTGACATTTGCCAAGAAGCGCGGCGTGGCGGTGGTGATCGTCGGTC
ATGTCACCAAGGAGGGACAGATTGCCGGCCCTCGCGTGGTTGAGCATATGGTCGATACGGTTCTGTACTTCGAAGGAGAG
CGCGGGCATCAGTTCCGCATTCTGCGCGCCGTGAAAAACCGCTTTGGTCCCGCAGATGAGATCGGTGTCTTTGAAATGAC
CGGCGGTGGGCTGGCAGAGGTCGCCAACCCCTCTGCCTTGTTTTTGTCGGAACGCGGGCAGCCCAGCCCCGGATCGGCGG
TTTTCGCCGGTATCGAGGGCACGCGCCCGGTGCTGACGGAGATACAGGCCCTGGTCGCGCCTTCGACGCTGGCCAGCCCG
CGCCGCACGGTCGTTGGCCTGGACAGCGGGCGCGTCAGCACCATCCTTGCCGTGCTGGAGGCGCGTTGCGGGATTCCCTT
TGCAGGGCTGGACGTTTTTCTGAATGTCGCGGGCGGAATGCGCGTACAGGAGCCCGCCGCAGACCTTGCGATTGCAGCGG
CTTTGCTGAGCGCGCGCGAGGACAGCGCCCTGCCCGCCGACTGTGTCACTTTTGGCGAAATCAGCCTTTCGGGCGCATTG
CGCCCGGTCGCTCAGGCGGAAAACAGGTTGAAAGAAGCACAAAAACTTGGTTTTTCACATGCGATCATACCTGCCTCTTC
GAAAATCGAGGGGTCGCGGGACATGCGGCTGGACCGGATCGCGGATCTGACAAGCTTTGTCGGAGAGGTTTTCGGTGCCG
GCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(332-426)

AAA domain (AAA_25)

(81-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.922

95.595

0.487
  radA Streptococcus mitis NCTC 12261

48.598

94.273

0.458
  radA Streptococcus pneumoniae Rx1

48.364

94.273

0.456
  radA Streptococcus pneumoniae D39

48.364

94.273

0.456
  radA Streptococcus pneumoniae R6

48.364

94.273

0.456
  radA Streptococcus pneumoniae TIGR4

48.364

94.273

0.456
  radA Streptococcus mitis SK321

48.364

94.273

0.456