Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   OSK17_RS13215 Genome accession   NZ_CP115738
Coordinates   2526855..2527658 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain W7     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2521855..2532658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSK17_RS13190 (OSK17_13190) glpQB 2523001..2523732 (-) 732 WP_041850009.1 glycerophosphodiester phosphodiesterase -
  OSK17_RS13195 (OSK17_13195) yqiI 2523811..2524431 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase family protein -
  OSK17_RS13200 (OSK17_13200) yqiH 2524446..2524739 (-) 294 WP_003230284.1 lipoprotein -
  OSK17_RS13205 (OSK17_13205) - 2525047..2525199 (+) 153 WP_014480226.1 hypothetical protein -
  OSK17_RS13210 (OSK17_13210) yqiG 2525272..2526390 (+) 1119 WP_032726120.1 NADH-dependent flavin oxidoreductase -
  OSK17_RS13215 (OSK17_13215) spo0A 2526855..2527658 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  OSK17_RS13220 (OSK17_13220) spoIVB 2527934..2529214 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  OSK17_RS13225 (OSK17_13225) recN 2529389..2531119 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  OSK17_RS13230 (OSK17_13230) argR 2531156..2531605 (-) 450 WP_003230265.1 arginine repressor ArgR -
  OSK17_RS13235 (OSK17_13235) yqxC 2531703..2532548 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=773655 OSK17_RS13215 WP_003226427.1 2526855..2527658(-) (spo0A) [Bacillus subtilis strain W7]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=773655 OSK17_RS13215 WP_003226427.1 2526855..2527658(-) (spo0A) [Bacillus subtilis strain W7]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1