Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   OSK17_RS10510 Genome accession   NZ_CP115738
Coordinates   2087015..2088145 (+) Length   376 a.a.
NCBI ID   WP_021481447.1    Uniprot ID   -
Organism   Bacillus subtilis strain W7     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2085650..2109622 2087015..2088145 within 0


Gene organization within MGE regions


Location: 2085650..2109622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSK17_RS10500 (OSK17_10500) - 2085650..2086024 (+) 375 WP_021481445.1 YoqO family protein -
  OSK17_RS22490 (OSK17_10505) - 2086805..2086882 (+) 78 WP_227057947.1 phage holin -
  OSK17_RS10510 (OSK17_10510) rapC 2087015..2088145 (+) 1131 WP_021481447.1 tetratricopeptide repeat protein Regulator
  OSK17_RS10515 (OSK17_10515) - 2088135..2088278 (+) 144 WP_153801665.1 hypothetical protein -
  OSK17_RS10520 (OSK17_10520) - 2088432..2088632 (-) 201 WP_021481449.1 hypothetical protein -
  OSK17_RS10525 (OSK17_10525) - 2088854..2089228 (-) 375 Protein_2024 UV damage repair protein UvrX -
  OSK17_RS10530 (OSK17_10530) - 2089226..2089381 (-) 156 Protein_2025 T7SS effector LXG polymorphic toxin -
  OSK17_RS10535 (OSK17_10535) yobM 2089482..2090039 (-) 558 WP_038829958.1 SMI1/KNR4 family protein -
  OSK17_RS10540 (OSK17_10540) aoxN 2090167..2091603 (+) 1437 WP_120363441.1 flavin monoamine oxidase family protein -
  OSK17_RS10545 (OSK17_10545) csaA 2091853..2092185 (-) 333 WP_032725963.1 chaperone CsaA -
  OSK17_RS10550 (OSK17_10550) yobQ 2092250..2092975 (-) 726 WP_072175277.1 helix-turn-helix domain-containing protein -
  OSK17_RS10555 (OSK17_10555) yobR 2092990..2093730 (-) 741 WP_041849922.1 GNAT family N-acetyltransferase -
  OSK17_RS10560 (OSK17_10560) yobS 2093808..2094383 (-) 576 WP_015714086.1 TetR/AcrR family transcriptional regulator -
  OSK17_RS10565 (OSK17_10565) yobT 2094389..2095090 (-) 702 WP_015714087.1 MBL fold metallo-hydrolase -
  OSK17_RS10570 (OSK17_10570) yobU 2095166..2095648 (-) 483 WP_014480008.1 GyrI-like domain-containing protein -
  OSK17_RS10575 (OSK17_10575) yobV 2095702..2096640 (-) 939 WP_015714088.1 helix-turn-helix transcriptional regulator -
  OSK17_RS10580 (OSK17_10580) csk22 2096845..2097390 (+) 546 WP_015714089.1 mother cell-specific sporulation protein Csk22 -
  OSK17_RS10585 (OSK17_10585) czrA 2097417..2097740 (-) 324 WP_003231284.1 Zn(II)-responsive metalloregulatory transcriptional repressor CzrA -
  OSK17_RS10590 (OSK17_10590) yocA 2097935..2098612 (+) 678 WP_014480011.1 lysozyme family protein -
  OSK17_RS10595 (OSK17_10595) ctaM 2098702..2099238 (-) 537 WP_003231280.1 DUF420 domain-containing protein -
  OSK17_RS10600 (OSK17_10600) yocB 2099375..2100157 (-) 783 WP_015251912.1 VLRF1 family aeRF1-type release factor -
  OSK17_RS10605 (OSK17_10605) yocC 2100328..2100825 (+) 498 WP_015714090.1 GNAT family N-acetyltransferase -
  OSK17_RS10610 (OSK17_10610) yocD 2100889..2101866 (+) 978 WP_015714091.1 S66 family peptidase -
  OSK17_RS10615 (OSK17_10615) desE 2102029..2103087 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  OSK17_RS10620 (OSK17_10620) desK 2103207..2104319 (+) 1113 WP_014480016.1 two-component sensor histidine kinase DesK -
  OSK17_RS10625 (OSK17_10625) desR 2104338..2104937 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  OSK17_RS10630 (OSK17_10630) walN 2105545..2106408 (-) 864 WP_014480017.1 LysM peptidoglycan-binding and 3D domain-containing protein -
  OSK17_RS10635 (OSK17_10635) recQ 2106656..2108431 (-) 1776 WP_015714092.1 DNA helicase RecQ -
  OSK17_RS10645 (OSK17_10645) azoJ 2108996..2109622 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44393.16 Da        Isoelectric Point: 5.8915

>NTDB_id=773653 OSK17_RS10510 WP_021481447.1 2087015..2088145(+) (rapC) [Bacillus subtilis strain W7]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=773653 OSK17_RS10510 WP_021481447.1 2087015..2088145(+) (rapC) [Bacillus subtilis strain W7]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455