Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PF050_RS15360 Genome accession   NZ_CP115712
Coordinates   3185333..3185953 (-) Length   206 a.a.
NCBI ID   WP_271064119.1    Uniprot ID   -
Organism   Kosakonia pseudosacchari strain RX.G5M8     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3180333..3190953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF050_RS15345 (PF050_15345) helD 3180569..3182623 (-) 2055 WP_271064118.1 DNA helicase IV -
  PF050_RS15350 (PF050_15350) - 3182746..3183192 (+) 447 WP_086871973.1 YccF domain-containing protein -
  PF050_RS15355 (PF050_15355) yccS 3183210..3185339 (+) 2130 WP_086871971.1 YccS family putative transporter -
  PF050_RS15360 (PF050_15360) sxy/tfoX 3185333..3185953 (-) 621 WP_271064119.1 TfoX/Sxy family DNA transformation protein Regulator
  PF050_RS15365 (PF050_15365) sulA 3186172..3186681 (+) 510 WP_086871967.1 SOS-induced cell division inhibitor SulA -
  PF050_RS15370 (PF050_15370) ompA 3187049..3188098 (+) 1050 WP_086871964.1 porin OmpA -
  PF050_RS15375 (PF050_15375) matP 3188182..3188634 (-) 453 WP_271064120.1 macrodomain Ter protein MatP -
  PF050_RS15380 (PF050_15380) - 3188817..3190577 (+) 1761 WP_271064121.1 Lon protease family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23519.24 Da        Isoelectric Point: 9.8281

>NTDB_id=773578 PF050_RS15360 WP_271064119.1 3185333..3185953(-) (sxy/tfoX) [Kosakonia pseudosacchari strain RX.G5M8]
MEDLSYQRIYQSREYLMPLGTICHRAHFGGYSLSVDKTVFAMVAEGELYLRACDESAQYTVTQDAPLLVFNKRGRQVSLN
YYFVSESVWRDRPLLLQLSALSLDAARRDKDLRSARKRLRDLPNLTFQLEVQLHEAGVLDAHTLRMLGAKACWLRLRKSN
KHLSAKVLLALEGAIVGLHEAALPAPRRRELMEWFNGVIKKGASPY

Nucleotide


Download         Length: 621 bp        

>NTDB_id=773578 PF050_RS15360 WP_271064119.1 3185333..3185953(-) (sxy/tfoX) [Kosakonia pseudosacchari strain RX.G5M8]
ATGGAAGACCTATCTTATCAACGGATATATCAGTCGCGCGAATACCTCATGCCTCTCGGCACAATTTGTCACCGCGCTCA
TTTTGGCGGTTACAGCTTGTCAGTGGATAAAACTGTTTTCGCAATGGTTGCAGAGGGGGAACTCTACCTTCGTGCTTGCG
ACGAGAGTGCGCAATATACGGTTACGCAAGATGCCCCTTTACTGGTATTCAACAAACGTGGGCGTCAGGTTTCGTTAAAT
TACTACTTCGTGAGCGAGAGTGTGTGGCGCGATCGTCCGTTACTTCTGCAACTTTCGGCTCTTTCACTTGATGCTGCGCG
GCGTGATAAAGATCTGCGCAGTGCCAGAAAACGGTTGCGCGATCTGCCTAACCTTACTTTTCAACTTGAAGTTCAACTCC
ATGAAGCTGGTGTACTGGATGCACATACACTGCGAATGCTCGGAGCAAAAGCTTGTTGGCTTAGATTGAGAAAATCAAAC
AAGCATCTAAGCGCGAAAGTGCTTCTTGCACTAGAGGGCGCAATTGTTGGGCTTCACGAAGCGGCGTTACCGGCGCCGCG
ACGCCGGGAACTGATGGAGTGGTTTAACGGTGTAATCAAGAAAGGAGCGAGTCCTTACTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

56.098

99.515

0.558