Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QSJ13_RS03570 Genome accession   NZ_CP128372
Coordinates   748914..749510 (+) Length   198 a.a.
NCBI ID   WP_000490551.1    Uniprot ID   A0AA36KBA4
Organism   Acinetobacter baumannii strain XH2146     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 743914..754510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSJ13_RS03540 (QSJ13_03540) - 744092..744466 (+) 375 WP_002036642.1 cell envelope integrity protein TolA -
  QSJ13_RS03545 (QSJ13_03545) - 744641..745408 (+) 768 WP_000934173.1 class I SAM-dependent methyltransferase -
  QSJ13_RS03550 (QSJ13_03550) - 745489..746574 (-) 1086 WP_000825836.1 alpha/beta fold hydrolase -
  QSJ13_RS03555 (QSJ13_03555) - 746708..747895 (+) 1188 WP_001076394.1 O-succinylhomoserine sulfhydrylase -
  QSJ13_RS03560 (QSJ13_03560) - 748073..748309 (+) 237 WP_000917295.1 hypothetical protein -
  QSJ13_RS03565 (QSJ13_03565) - 748575..748904 (+) 330 WP_001024697.1 YbaB/EbfC family nucleoid-associated protein -
  QSJ13_RS03570 (QSJ13_03570) recR 748914..749510 (+) 597 WP_000490551.1 recombination mediator RecR Machinery gene
  QSJ13_RS03575 (QSJ13_03575) - 749814..750938 (+) 1125 WP_000486120.1 HRDC domain-containing protein -
  QSJ13_RS03580 (QSJ13_03580) - 751441..751707 (+) 267 WP_005120048.1 hypothetical protein -
  QSJ13_RS03585 (QSJ13_03585) - 751838..752179 (+) 342 WP_000367441.1 hypothetical protein -
  QSJ13_RS03590 (QSJ13_03590) - 752251..752415 (-) 165 WP_000086294.1 hypothetical protein -
  QSJ13_RS03595 (QSJ13_03595) - 752903..753163 (+) 261 WP_188146221.1 YcgL domain-containing protein -
  QSJ13_RS03600 (QSJ13_03600) - 753156..753542 (+) 387 WP_001206390.1 hypothetical protein -
  QSJ13_RS03605 (QSJ13_03605) - 753572..754423 (+) 852 WP_001271636.1 MoxR family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21801.90 Da        Isoelectric Point: 6.1660

>NTDB_id=773494 QSJ13_RS03570 WP_000490551.1 748914..749510(+) (recR) [Acinetobacter baumannii strain XH2146]
MFSDRFEQLVQALRILPSVGPKSAQRMALHLLMKNREGAFALAHALHEASSYIHECSVCHSLTEHEICDICASTERDDQL
LCVVESPADVMAIEQSGSFRGKYHVLGGHLSPLDGIGPEEIGIPYLIQRLSQGTIEEVILATNATVEGQATAHYLVEATK
HLPIHMTRIAQGVPQGGELEYVDSHTLSQAVHNRMRMK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=773494 QSJ13_RS03570 WP_000490551.1 748914..749510(+) (recR) [Acinetobacter baumannii strain XH2146]
GTGTTTAGTGATAGATTTGAACAACTCGTTCAAGCTTTACGTATTTTGCCTAGCGTTGGACCGAAGTCGGCCCAACGTAT
GGCTTTACATCTTTTGATGAAAAATCGTGAAGGTGCATTTGCTTTAGCACATGCTCTACATGAAGCATCAAGTTATATTC
ATGAATGTAGTGTTTGCCACTCTTTAACAGAGCATGAAATTTGTGATATTTGCGCTTCAACAGAAAGAGATGATCAATTG
CTTTGTGTAGTTGAGTCTCCGGCAGATGTTATGGCAATCGAGCAAAGTGGTAGTTTTCGTGGCAAATACCATGTGTTGGG
TGGACACCTTTCTCCATTAGATGGAATCGGTCCAGAAGAAATAGGCATTCCTTATCTAATCCAACGTTTAAGCCAAGGTA
CGATCGAAGAAGTCATTTTGGCAACTAATGCTACTGTGGAAGGTCAGGCGACAGCGCATTATTTGGTTGAAGCGACGAAG
CATTTACCTATTCACATGACACGTATTGCTCAAGGCGTGCCACAAGGTGGTGAGCTTGAATATGTGGATAGTCATACCTT
AAGTCAGGCTGTTCATAACCGTATGCGTATGAAATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36KBA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.538

93.939

0.475
  recR Bacillus subtilis subsp. subtilis str. 168

43.523

97.475

0.424