Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PF325_RS08260 Genome accession   NZ_CP115689
Coordinates   1750375..1751001 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei strain 2020CK-00204     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1745375..1756001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF325_RS08240 (PF325_08240) - 1745774..1747534 (-) 1761 WP_017384808.1 AAA family ATPase -
  PF325_RS08245 (PF325_08245) matP 1747721..1748173 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  PF325_RS08250 (PF325_08250) ompA 1748239..1749291 (-) 1053 WP_017694761.1 porin OmpA -
  PF325_RS08255 (PF325_08255) sulA 1749648..1750157 (-) 510 WP_032104231.1 SOS-induced cell division inhibitor SulA -
  PF325_RS08260 (PF325_08260) sxy/tfoX 1750375..1751001 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  PF325_RS08265 (PF325_08265) yccS 1750958..1753120 (-) 2163 WP_271040657.1 YccS family putative transporter -
  PF325_RS08270 (PF325_08270) - 1753139..1753585 (-) 447 WP_003858149.1 YccF domain-containing protein -
  PF325_RS08275 (PF325_08275) helD 1753708..1755762 (+) 2055 WP_271040658.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=773471 PF325_RS08260 WP_017384804.1 1750375..1751001(+) (sxy/tfoX) [Enterobacter hormaechei strain 2020CK-00204]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=773471 PF325_RS08260 WP_017384804.1 1750375..1751001(+) (sxy/tfoX) [Enterobacter hormaechei strain 2020CK-00204]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACACTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAATCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572