Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   QR290_RS21715 Genome accession   NZ_CP128260
Coordinates   4865563..4865919 (-) Length   118 a.a.
NCBI ID   WP_007950801.1    Uniprot ID   A0ABS5MRM5
Organism   Pseudomonas fluorescens strain PH.SM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4860563..4870919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR290_RS21690 (QR290_21690) - 4861325..4861885 (-) 561 WP_289203587.1 DUF1285 domain-containing protein -
  QR290_RS21695 (QR290_21695) - 4861901..4862506 (-) 606 WP_007950810.1 DUF4823 domain-containing protein -
  QR290_RS21700 (QR290_21700) - 4862675..4863643 (-) 969 WP_289203588.1 radical SAM protein -
  QR290_RS21705 (QR290_21705) - 4863782..4864420 (-) 639 WP_007950805.1 TetR/AcrR family transcriptional regulator -
  QR290_RS21710 (QR290_21710) - 4864762..4865547 (-) 786 WP_289203589.1 TatD family hydrolase -
  QR290_RS21715 (QR290_21715) pilZ 4865563..4865919 (-) 357 WP_007950801.1 PilZ domain-containing protein Machinery gene
  QR290_RS21720 (QR290_21720) - 4865962..4866945 (-) 984 WP_289203590.1 DNA polymerase III subunit delta' -
  QR290_RS21725 (QR290_21725) tmk 4866938..4867570 (-) 633 WP_289203591.1 dTMP kinase -
  QR290_RS21730 (QR290_21730) mltG 4867590..4868771 (-) 1182 WP_289203592.1 endolytic transglycosylase MltG -
  QR290_RS21735 (QR290_21735) pabC 4868775..4869590 (-) 816 WP_289203593.1 aminodeoxychorismate lyase -
  QR290_RS21740 (QR290_21740) fabF 4869590..4870834 (-) 1245 WP_289203594.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12743.68 Da        Isoelectric Point: 9.8518

>NTDB_id=773448 QR290_RS21715 WP_007950801.1 4865563..4865919(-) (pilZ) [Pseudomonas fluorescens strain PH.SM]
MNEPVSPGPRNGILSLTIKDKSVLYAAYMPFIKNGGLFIPTNKSYKLGDEVFMLLNLMDEAEKIPVAGKVAWITPKGAQG
NRAAGVGVQFNDGDNTARSRIETHLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=773448 QR290_RS21715 WP_007950801.1 4865563..4865919(-) (pilZ) [Pseudomonas fluorescens strain PH.SM]
ATGAATGAACCCGTCAGCCCGGGGCCGCGCAATGGCATCTTGTCCCTGACCATCAAGGACAAGTCGGTCCTTTACGCCGC
CTACATGCCGTTCATCAAGAACGGCGGCCTGTTCATCCCGACCAACAAAAGCTACAAGTTGGGCGACGAGGTGTTCATGC
TGCTGAACCTGATGGATGAGGCGGAGAAGATTCCGGTGGCCGGCAAAGTCGCCTGGATCACCCCCAAAGGCGCCCAAGGC
AACCGCGCGGCCGGCGTCGGCGTGCAATTCAACGATGGCGACAACACCGCGCGCAGTCGCATCGAAACTCATCTGGCCGG
AGCCTTGAAGTCCGACCGTCCCACTCATACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

47.222

91.525

0.432
  pilZ Legionella pneumophila strain ERS1305867

47.222

91.525

0.432