Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QR290_RS05670 Genome accession   NZ_CP128260
Coordinates   1285133..1286626 (-) Length   497 a.a.
NCBI ID   WP_011332472.1    Uniprot ID   A0ABT5PM50
Organism   Pseudomonas fluorescens strain PH.SM     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1280133..1291626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR290_RS05635 (QR290_05635) - 1281109..1281549 (+) 441 WP_085698456.1 hypothetical protein -
  QR290_RS05640 (QR290_05640) - 1281551..1282162 (+) 612 WP_289204519.1 superoxide dismutase -
  QR290_RS05645 (QR290_05645) - 1282193..1283086 (+) 894 WP_115076557.1 ZIP family metal transporter -
  QR290_RS05650 (QR290_05650) - 1283124..1283399 (-) 276 WP_115076558.1 HPr family phosphocarrier protein -
  QR290_RS05655 (QR290_05655) rapZ 1283415..1284272 (-) 858 WP_115076559.1 RNase adapter RapZ -
  QR290_RS05660 (QR290_05660) ptsN 1284275..1284739 (-) 465 WP_007953580.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QR290_RS05665 (QR290_05665) raiA 1284751..1285059 (-) 309 WP_007953578.1 ribosome-associated translation inhibitor RaiA -
  QR290_RS05670 (QR290_05670) rpoN/rpoN1 1285133..1286626 (-) 1494 WP_011332472.1 RNA polymerase factor sigma-54 Machinery gene
  QR290_RS05675 (QR290_05675) lptB 1286822..1287547 (-) 726 WP_007953572.1 LPS export ABC transporter ATP-binding protein -
  QR290_RS05680 (QR290_05680) lptA 1287547..1288092 (-) 546 WP_115076561.1 lipopolysaccharide transport periplasmic protein LptA -
  QR290_RS05685 (QR290_05685) lptC 1288079..1288651 (-) 573 WP_007953568.1 LPS export ABC transporter periplasmic protein LptC -
  QR290_RS05690 (QR290_05690) - 1288660..1289184 (-) 525 WP_085611339.1 HAD family hydrolase -
  QR290_RS05695 (QR290_05695) - 1289185..1290159 (-) 975 WP_011332477.1 KpsF/GutQ family sugar-phosphate isomerase -
  QR290_RS05700 (QR290_05700) - 1290436..1291248 (+) 813 WP_007953564.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 56536.61 Da        Isoelectric Point: 4.4153

>NTDB_id=773413 QR290_RS05670 WP_011332472.1 1285133..1286626(-) (rpoN/rpoN1) [Pseudomonas fluorescens strain PH.SM]
MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDNSDPMADNAEQKPNTEIQEPSYQ
ETAPTVDNLEDGEWNERIPNELPVDTAWEDVYQTSASSLPSSDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIA
VTLIDCINNQGYLDETLEEILDAFDPELDIELDEIEAVLHRIQQFEPAGIGARNLGECLLLQLRQLSAKTPWLAEAKRLV
TDYIDLLGSRDYSQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESTEAEYVVPDVIVRKDNERWLVELNQESVPRLRVN
AQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHEST
ISRVTTQKFMHTPRGIYELKYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLM

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=773413 QR290_RS05670 WP_011332472.1 1285133..1286626(-) (rpoN/rpoN1) [Pseudomonas fluorescens strain PH.SM]
ATGAAACCATCGCTAGTCTTGAGAATGGGCCAGCAGCTGACGATGACACCGCAGCTGCAACAGGCCATCCGCCTGCTCCA
ATTGTCGACCCTGGATCTGCAACAGGAAATCCAGGAGGCTCTGGAATCCAATCCGATGCTCGAACGCCAGGAAGACGGCG
ACGACTTCGACAACTCCGATCCCATGGCCGACAACGCCGAGCAGAAGCCCAACACCGAGATCCAGGAACCCTCCTATCAG
GAGACCGCGCCGACAGTCGATAACCTCGAAGACGGCGAATGGAACGAGCGAATCCCCAACGAACTGCCCGTCGACACCGC
CTGGGAAGACGTCTACCAGACCAGCGCCAGCAGCCTGCCGAGCAGCGACGATGACGAGTGGGACTTCACCACCCGCACCT
CCGCCGGCGAGAGCCTGCAAAGCCACCTGCTGTGGCAGTTGAACCTGGCACCGATGTCCGACACCGATCGCCTGATCGCC
GTCACCCTGATCGATTGCATCAACAATCAGGGCTACCTCGACGAAACCCTCGAAGAAATCCTCGACGCCTTCGATCCGGA
ACTCGACATCGAGCTGGACGAGATCGAAGCCGTCCTGCACCGCATCCAGCAGTTCGAACCGGCCGGCATCGGCGCACGCA
ACCTGGGCGAATGTCTGCTGCTGCAATTGCGTCAGCTGTCGGCCAAGACCCCTTGGCTGGCCGAAGCCAAGCGTCTGGTT
ACCGATTACATCGATCTGCTCGGCAGCCGCGATTACAGCCAGCTGATGCGCCGCATGAAGCTCAAGGAAGATGAATTGCG
CCAGGTCATCGAACTGGTGCAGAGCCTCAATCCGCGCCCCGGTTCGCAGATCGAGTCGACCGAAGCCGAATACGTAGTGC
CTGACGTCATCGTGCGCAAGGACAACGAGCGCTGGCTGGTCGAGCTGAACCAGGAATCGGTGCCGCGCCTGCGGGTCAAC
GCCCAGTACGCCGGTTTCGTCCGTCGCGCCGACACCAGTGCCGACAACACCTTCATGCGCAATCAGTTGCAGGAAGCCCG
CTGGTTCATCAAGAGCCTGCAGAGCCGCAACGAAACCCTGATGAAAGTAGCCACCCAGATTGTCGAGCATCAGCGCGGTT
TTCTGGAGTACGGCGACGAAGCCATGAAGCCGCTGGTCCTGCATGACATCGCTGAAGCGGTGGGCATGCACGAATCGACG
ATTTCCCGGGTGACCACACAAAAATTCATGCATACCCCACGGGGCATATATGAACTGAAATACTTTTTCTCCAGCCATGT
GAGCACCTCCGAAGGCGGCGAATGCTCGTCCACGGCGATCCGCGCGATCATCAAGAAACTGGTTGCCGCGGAAAATCAGA
AAAAGCCGTTGAGTGACAGCAAGATCGCTGGTTTACTGGAGGCACAAGGCATTCAGGTGGCTCGCCGCACCGTCGCCAAG
TACCGCGAATCCCTGGGGATCGCGCCTTCGAGCGAACGCAAGCGGTTGATGTAA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-495)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(130-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

44.533

100

0.451