Detailed information NTG0773327

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QRX22_RS05760
• Genome accession: NZ_CP128255
• Coordinates: 1196713..1197705 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain T309.Ta3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1191713..1202705

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QRX22_RS05730 (QRX22_05730)	ispD	1191774..1192484 (+)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QRX22_RS05735 (QRX22_05735)	ispF	1192484..1192963 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QRX22_RS05740 (QRX22_05740)	truD	1192960..1194009 (+)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
QRX22_RS05745 (QRX22_05745)	surE	1193990..1194751 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QRX22_RS05750 (QRX22_05750)	pcm	1194745..1195371 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
QRX22_RS05755 (QRX22_05755)	nlpD	1195556..1196650 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QRX22_RS05760 (QRX22_05760)	rpoS	1196713..1197705 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QRX22_RS05765 (QRX22_05765)	-	1197883..1198434 (-)	552	WP_001179442.1	flavodoxin family protein	-
QRX22_RS05770 (QRX22_05770)	-	1198659..1199702 (+)	1044	WP_033559140.1	MBL fold metallo-hydrolase	-
QRX22_RS05775 (QRX22_05775)	ygbN	1199845..1201209 (-)	1365	WP_021531526.1	GntP family transporter	-
QRX22_RS05780 (QRX22_05780)	ygbM	1201298..1202074 (-)	777	WP_001136911.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=773327 QRX22_RS05760 WP_000081550.1 1196713..1197705(+) (rpoS) [Escherichia coli strain T309.Ta3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=773327 QRX22_RS05760 WP_000081550.1 1196713..1197705(+) (rpoS) [Escherichia coli strain T309.Ta3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715