Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   O9K67_RS15915 Genome accession   NZ_CP115659
Coordinates   3267089..3267709 (-) Length   206 a.a.
NCBI ID   WP_061494715.1    Uniprot ID   -
Organism   Kosakonia oryzendophytica strain FY-07     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3262089..3272709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O9K67_RS15900 (O9K67_15900) helD 3262325..3264379 (-) 2055 WP_061494718.1 DNA helicase IV -
  O9K67_RS15905 (O9K67_15905) - 3264502..3264948 (+) 447 WP_061494717.1 YccF domain-containing protein -
  O9K67_RS15910 (O9K67_15910) yccS 3264966..3267092 (+) 2127 WP_061494716.1 YccS family putative transporter -
  O9K67_RS15915 (O9K67_15915) sxy/tfoX 3267089..3267709 (-) 621 WP_061494715.1 TfoX/Sxy family DNA transformation protein Regulator
  O9K67_RS15920 (O9K67_15920) sulA 3267927..3268436 (+) 510 WP_061494714.1 SOS-induced cell division inhibitor SulA -
  O9K67_RS15925 (O9K67_15925) ompA 3268804..3269859 (+) 1056 WP_061494713.1 porin OmpA -
  O9K67_RS15930 (O9K67_15930) matP 3269939..3270391 (-) 453 WP_061494712.1 macrodomain Ter protein MatP -
  O9K67_RS15935 (O9K67_15935) - 3270572..3272332 (+) 1761 WP_061494711.1 Lon protease family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23643.44 Da        Isoelectric Point: 9.0752

>NTDB_id=773311 O9K67_RS15915 WP_061494715.1 3267089..3267709(-) (sxy/tfoX) [Kosakonia oryzendophytica strain FY-07]
MEDISHQRIYQSCEWLAPLGDICYRAHFGGYSLSVDKTVFAMVAGGELYLRACEESAHYTVTRQAPMLMFNKRGRRVSLN
YYFVDERLWGDRALLLELSAFSLSAAKREKIERTTRLRLRDLPNLTFQLEALLHDAGVLDAHTLRLLGAKACWLRLRKMN
QQLSVKVLFALEGAIIGLHEAALPANKRQELLEWFNELVTKGNKPY

Nucleotide


Download         Length: 621 bp        

>NTDB_id=773311 O9K67_RS15915 WP_061494715.1 3267089..3267709(-) (sxy/tfoX) [Kosakonia oryzendophytica strain FY-07]
ATGGAAGACATATCACATCAACGGATCTATCAGTCATGCGAATGGCTCGCACCTCTTGGGGATATTTGTTATCGCGCCCA
TTTTGGTGGTTACAGTTTGTCGGTAGACAAAACGGTTTTTGCAATGGTTGCTGGCGGAGAACTTTATCTGCGCGCATGTG
AAGAAAGTGCACATTATACCGTCACCAGGCAGGCTCCCATGCTGATGTTCAATAAGCGTGGCCGTCGGGTTTCGTTAAAT
TACTACTTCGTGGATGAACGTTTGTGGGGCGATCGCGCATTATTGCTGGAGCTTTCCGCATTTTCACTCAGCGCAGCGAA
AAGGGAGAAAATAGAGCGAACAACTCGGTTGCGCCTGCGCGATCTGCCTAATCTTACTTTCCAGCTTGAGGCTCTGTTGC
ATGATGCCGGGGTGCTGGATGCGCATACGCTTCGTTTACTTGGCGCGAAAGCATGTTGGCTCAGATTAAGAAAAATGAAT
CAGCAGCTCAGCGTTAAAGTTCTCTTCGCCCTTGAAGGTGCCATTATTGGCCTTCATGAAGCCGCACTCCCGGCGAACAA
ACGCCAGGAGTTGCTGGAGTGGTTTAATGAACTGGTAACAAAGGGGAATAAGCCATACTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(118-195)

TfoX N-terminal domain (TfoX_N)

(15-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.073

99.515

0.568