Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   H7R78_RS01980 Genome accession   NZ_AP022241
Coordinates   411260..412699 (+) Length   479 a.a.
NCBI ID   WP_039040474.1    Uniprot ID   -
Organism   Aeromonas caviae strain WP8-S18-CRE-01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 406260..417699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R78_RS01950 (WP8S18C01_03730) mlaF 406837..407637 (-) 801 WP_069785529.1 phospholipid ABC transporter ATP-binding protein MlaF -
  H7R78_RS01955 (WP8S18C01_03740) - 407844..408839 (+) 996 WP_029314845.1 KpsF/GutQ family sugar-phosphate isomerase -
  H7R78_RS01960 (WP8S18C01_03750) kdsC 408839..409393 (+) 555 WP_103858764.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  H7R78_RS01965 (WP8S18C01_03760) lptC 409390..409950 (+) 561 WP_039040473.1 LPS export ABC transporter periplasmic protein LptC -
  H7R78_RS01970 (WP8S18C01_03770) lptA 409937..410455 (+) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  H7R78_RS01975 (WP8S18C01_03780) lptB 410468..411193 (+) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  H7R78_RS01980 (WP8S18C01_03790) rpoN/rpoN1 411260..412699 (+) 1440 WP_039040474.1 RNA polymerase factor sigma-54 Machinery gene
  H7R78_RS01985 (WP8S18C01_03800) hpf 412720..413007 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  H7R78_RS01990 (WP8S18C01_03810) ptsN 413010..413456 (+) 447 WP_103858763.1 PTS IIA-like nitrogen regulatory protein PtsN -
  H7R78_RS01995 (WP8S18C01_03820) rapZ 413497..414363 (+) 867 WP_010675869.1 RNase adapter RapZ -
  H7R78_RS02000 (WP8S18C01_03830) npr 414384..414656 (+) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  H7R78_RS02005 (WP8S18C01_03840) - 414672..416576 (-) 1905 WP_103858762.1 BglG family transcription antiterminator -
  H7R78_RS02010 (WP8S18C01_03850) dagF 416680..417420 (-) 741 WP_041211846.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53761.57 Da        Isoelectric Point: 4.3728

>NTDB_id=77331 H7R78_RS01980 WP_039040474.1 411260..412699(+) (rpoN/rpoN1) [Aeromonas caviae strain WP8-S18-CRE-01]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQTETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=77331 H7R78_RS01980 WP_039040474.1 411260..412699(+) (rpoN/rpoN1) [Aeromonas caviae strain WP8-S18-CRE-01]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGACAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACGGCCCAGAGCGCAGGCCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACCGAGAACCTGCAAGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCGGCCATCGCCCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATCGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACTCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTACTGGATCTTATCCAGCAACTGGAGCCCAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAACTCAATCCGG
ACTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCTCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCTCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482

Multiple sequence alignment