Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   PF555_RS16280 Genome accession   NZ_CP115645
Coordinates   3415688..3416488 (-) Length   266 a.a.
NCBI ID   WP_193759251.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00371     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3410688..3421488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF555_RS16260 (PF555_16260) - 3411753..3412451 (-) 699 WP_000058788.1 tetratricopeptide repeat protein -
  PF555_RS16265 (PF555_16265) hisS 3412480..3413772 (-) 1293 WP_000095252.1 histidine--tRNA ligase -
  PF555_RS16270 (PF555_16270) ispG 3413769..3414884 (-) 1116 WP_000572095.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  PF555_RS16275 (PF555_16275) - 3414906..3415697 (-) 792 WP_000405161.1 RodZ domain-containing protein -
  PF555_RS16280 (PF555_16280) pilF 3415688..3416488 (-) 801 WP_193759251.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  PF555_RS16285 (PF555_16285) rlmN 3416504..3417736 (-) 1233 WP_000093084.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  PF555_RS16290 (PF555_16290) ndk 3417859..3418290 (-) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  PF555_RS16295 (PF555_16295) iscX 3418404..3418604 (-) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  PF555_RS16300 (PF555_16300) - 3418704..3419255 (-) 552 WP_000669566.1 phosphatase PAP2 family protein -
  PF555_RS16305 (PF555_16305) - 3419280..3420578 (-) 1299 WP_001991191.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30110.44 Da        Isoelectric Point: 9.2307

>NTDB_id=773242 PF555_RS16280 WP_193759251.1 3415688..3416488(-) (pilF) [Acinetobacter baumannii strain 2022CK-00371]
MSTPKLKIMLCMGVAVALLTSGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAVEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=773242 PF555_RS16280 WP_193759251.1 3415688..3416488(-) (pilF) [Acinetobacter baumannii strain 2022CK-00371]
TTGAGTACTCCGAAGTTGAAGATCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGACAAGTGGTTGTCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCTCTTGACCAAGCGTTAAGTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAACCCAATTTAGAAAAAGCGGAACATTACTTTAAGCGTGCAATTTCGTCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACGTATTTGTACCAAATGGAGCGTTATAATGATGCTGTTGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCTTTAGAAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGTGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

99.248

100

0.992
  pilF Acinetobacter baylyi ADP1

73.846

97.744

0.722