Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   PF555_RS01990 Genome accession   NZ_CP115645
Coordinates   434090..434563 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain 2022CK-00371     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 429090..439563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF555_RS01965 (PF555_01965) - 429554..431659 (-) 2106 WP_001117589.1 HD domain-containing protein -
  PF555_RS01970 (PF555_01970) - 431699..431828 (-) 130 Protein_373 hypothetical protein -
  PF555_RS01975 (PF555_01975) rpoZ 431867..432145 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  PF555_RS01980 (PF555_01980) gmk 432218..432847 (-) 630 WP_000015937.1 guanylate kinase -
  PF555_RS01985 (PF555_01985) ispH 432970..433920 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PF555_RS01990 (PF555_01990) fimU 434090..434563 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  PF555_RS01995 (PF555_01995) pilV 434557..435117 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  PF555_RS02000 (PF555_02000) pilW 435118..436119 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  PF555_RS02005 (PF555_02005) pilX 436116..436934 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=773218 PF555_RS01990 WP_001214065.1 434090..434563(+) (fimU) [Acinetobacter baumannii strain 2022CK-00371]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=773218 PF555_RS01990 WP_001214065.1 434090..434563(+) (fimU) [Acinetobacter baumannii strain 2022CK-00371]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1