Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   PF553_RS17840 Genome accession   NZ_CP115643
Coordinates   3690274..3690801 (-) Length   175 a.a.
NCBI ID   WP_000695069.1    Uniprot ID   A0A009IQZ1
Organism   Acinetobacter baumannii strain 2022CK-00317     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3685274..3695801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF553_RS17820 (PF553_17820) - 3685463..3686338 (-) 876 WP_000218807.1 hypothetical protein -
  PF553_RS17825 (PF553_17825) aroB 3686354..3687436 (-) 1083 WP_001194249.1 3-dehydroquinate synthase -
  PF553_RS17830 (PF553_17830) aroK 3687465..3688034 (-) 570 WP_000643712.1 shikimate kinase AroK -
  PF553_RS17835 (PF553_17835) pilQ 3688046..3690211 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  PF553_RS17840 (PF553_17840) pilP 3690274..3690801 (-) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  PF553_RS17845 (PF553_17845) pilO 3690812..3691552 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  PF553_RS17850 (PF553_17850) pilN 3691549..3692190 (-) 642 WP_000201225.1 PilN domain-containing protein Machinery gene
  PF553_RS17855 (PF553_17855) pilM 3692190..3693248 (-) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19449.66 Da        Isoelectric Point: 8.9898

>NTDB_id=773206 PF553_RS17840 WP_000695069.1 3690274..3690801(-) (pilP) [Acinetobacter baumannii strain 2022CK-00317]
MKIKQITLYVLACTVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=773206 PF553_RS17840 WP_000695069.1 3690274..3690801(-) (pilP) [Acinetobacter baumannii strain 2022CK-00317]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTACTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009IQZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714