Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QSG85_RS09455 Genome accession   NZ_CP127906
Coordinates   2046011..2046646 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain SAAb472     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2041011..2051646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG85_RS09430 (QSG85_09435) - 2041067..2042047 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  QSG85_RS09435 (QSG85_09440) kdsB 2042059..2042820 (-) 762 WP_000680698.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QSG85_RS09440 (QSG85_09445) lpxK 2042830..2043840 (-) 1011 WP_000050454.1 tetraacyldisaccharide 4'-kinase -
  QSG85_RS09445 (QSG85_09450) msbA 2043843..2045570 (-) 1728 WP_032034468.1 lipid A export permease/ATP-binding protein MsbA -
  QSG85_RS09450 (QSG85_09455) - 2045567..2045995 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  QSG85_RS09455 (QSG85_09460) exbB 2046011..2046646 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QSG85_RS09460 (QSG85_09465) - 2046696..2047583 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  QSG85_RS09465 (QSG85_09470) - 2047580..2048362 (-) 783 WP_000057212.1 ParA family protein -
  QSG85_RS09470 (QSG85_09475) rsmG 2048384..2049016 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  QSG85_RS09475 (QSG85_09480) murU 2049104..2049793 (-) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  QSG85_RS09480 (QSG85_09485) - 2049793..2050806 (-) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=773191 QSG85_RS09455 WP_000264037.1 2046011..2046646(-) (exbB) [Acinetobacter baumannii strain SAAb472]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=773191 QSG85_RS09455 WP_000264037.1 2046011..2046646(-) (exbB) [Acinetobacter baumannii strain SAAb472]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCAGCGCTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393