Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   H7R41_RS15730 Genome accession   NZ_AP022238
Coordinates   3334199..3336427 (+) Length   742 a.a.
NCBI ID   WP_000156647.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain WP8-W18-ESBL-11     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3329199..3341427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R41_RS15705 (WP8W18E11_30800) lnt 3329586..3331145 (+) 1560 WP_140983407.1 apolipoprotein N-acyltransferase -
  H7R41_RS15710 (WP8W18E11_30810) - 3331147..3331485 (-) 339 WP_000434938.1 tRNA-binding protein -
  H7R41_RS15715 (WP8W18E11_30820) - 3331629..3331973 (-) 345 WP_000643174.1 hypothetical protein -
  H7R41_RS15720 (WP8W18E11_30830) gspG 3332240..3332821 (-) 582 WP_000865307.1 type II secretion system major pseudopilin GspG -
  H7R41_RS15725 (WP8W18E11_30840) gspF 3332845..3334050 (-) 1206 WP_031379568.1 type II secretion system inner membrane protein GspF -
  H7R41_RS15730 (WP8W18E11_30850) priA 3334199..3336427 (+) 2229 WP_000156647.1 primosomal protein N' Machinery gene
  H7R41_RS15735 (WP8W18E11_30860) - 3336504..3338345 (+) 1842 WP_000008979.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  H7R41_RS15740 (WP8W18E11_30870) - 3338511..3339386 (+) 876 WP_005112355.1 Hsp33 family molecular chaperone HslO -
  H7R41_RS15745 (WP8W18E11_30880) - 3339524..3340135 (+) 612 WP_001105722.1 LysE family translocator -
  H7R41_RS15750 (WP8W18E11_30890) - 3340286..3341242 (+) 957 WP_001107916.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83953.78 Da        Isoelectric Point: 8.5625

>NTDB_id=77319 H7R41_RS15730 WP_000156647.1 3334199..3336427(+) (priA) [Acinetobacter baumannii strain WP8-W18-ESBL-11]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGHFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNAEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVQLAQMPLTLNEDQKKATQHVLNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGNLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=77319 H7R41_RS15730 WP_000156647.1 3334199..3336427(+) (priA) [Acinetobacter baumannii strain WP8-W18-ESBL-11]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGACAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGTCACTTTCAGCTTAAGGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTTCCGATTGGCGA
GGTGATGCAGACTGCTTTACCTGCGTTATTGCGTCAGGGCAAACCCATGGATGTTTTATTTCATCTATGGAAAATCATTC
CATGTGACAATGCCGAAGCTTTACTAAAACGTTCAATCAAACAGCAAGATGCTTATCAAATTTTAAAATTACATCCTGCC
GGAACCACTGAAAATATTCTCAATTTAAGTGGTGTAGAAACTGCAACACTTAAAGCACTACAAAAGAAAGGTCTCGTAGA
CTGTACGCTTGAGCCTCATGACTTTAGTCCATCCCCTGTGCAATTGGCGCAAATGCCACTCACGCTCAATGAAGACCAAA
AGAAGGCCACTCAGCACGTCCTTAATGCACAGCATCAATATCAAGCGTTTTTGTTGGATGGTTTAACCGGAAGTGGTAAA
ACTGAAGTTTATTTGCACATCATGCATGAGGTGTTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTTCCCGAAATTGGTTT
AACCCCTCAAACCATTTCGCGCTTTAAGTCTCGTTTTAACTGTGACATTGCTTTATTACATTCAGGCTTAAATGACTCTA
AACGCCTACAAGCCTGGCAGCAAGCACAGACTGGAAAGGCCTCTATTATTTTAGGAACACGTTCAGCCATTTATACCCCG
CTGCCACGTTTGGGCCTTATCATTTTAGATGAAGAACACGACCTGTCTTATAAACAACAAGAAGGTTTCCGTTACCATGC
GCGTGATGTCGCGCTTTATCGAGGAAATTTACAAGGCTGTCCTGTTCTTTTAGGTTCGGCAACCCCAAGCATTGATAGCT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCGCTTCAGCTGAACCAACGTGCAGGCCATGCGCTTTTACCCAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGTATTAGTCAGCCTTTAATCGAACAGATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATTTTCTTAAACCGACGTGGTTATGCACCTGTTCTGGTCTGTGAAAGTTGTGGTTGGCAAGCGA
ATTGTCCACATTGTGATGCGCATTTTACGTTGCACACTCAGCCTTACTCTTATTTACATTGTCACCACTGCGGCACAGTT
CATCGCTTGCCTGACCACTGCCCTGAGTGTCAGCAGAAGAGTTTAAAAACTTTAGGTGCAGGAACAGCCAAGGTTGAAGA
GCACTTACAAGAGTTATTTCCAGACTATGATGTGATTCGGGTTGACCGTGACAGCACCAGTCGTGTCGGTAGTTGGCAAA
AAATTTATGACCGTATTCATCAAAACAAACCAACAATTTTGCTCGGTACTCAAATGTTGGCAAAGGGTCACCATTTTCCA
CATGTGACTTTGGTTGCCATTTTAGATATTGATGCGGGATTACTCAGTGTAGATATTCGAGCGCCAGAACGTACTGCGCA
GTTGATTGTACAAGTGGCTGGTCGTGCAGGCCGTGGAGAACATAAAGGCCATGTTTATTTACAGACTTTAAGGCCAGATC
ATCCTTTACTCACCACACTCATCGAAAAGGATTATCGGGCGGTTGCGAAACAAACACTAGCTGAGCGTAAAGTTGCATTA
CTGCCGCCTTATCGTTATGCAGTTTTAATTCGTGCTGAGTCAAAAGATCGTGACTATACTTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGCCAAATTGCAGGTGATATTGTTGATATCTGGGGGCCCATTCCAGCTCCAATGGAACGTAAAGCAG
GACGTTACCGGGCACATATGGTGATTTTGTCTGCCGACCGTGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTTCATGCACCAAGACAGCATCAACTCAGACTCTCTATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.709

100

0.977

Multiple sequence alignment