Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   PF553_RS01530 Genome accession   NZ_CP115643
Coordinates   313615..313941 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain 2022CK-00317     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 308615..318941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF553_RS01505 (PF553_01505) hemC 309232..310149 (+) 918 WP_031956197.1 hydroxymethylbilane synthase -
  PF553_RS01510 (PF553_01510) - 310154..310921 (+) 768 WP_000897415.1 uroporphyrinogen-III synthase -
  PF553_RS01515 (PF553_01515) - 310930..311769 (+) 840 WP_001230201.1 hypothetical protein -
  PF553_RS01520 (PF553_01520) - 311779..312972 (+) 1194 WP_000681774.1 hypothetical protein -
  PF553_RS01525 (PF553_01525) - 312980..313420 (+) 441 WP_024432422.1 thioesterase family protein -
  PF553_RS01530 (PF553_01530) hns 313615..313941 (+) 327 WP_000801427.1 H-NS histone family protein Regulator
  PF553_RS01535 (PF553_01535) gspN 314272..315015 (+) 744 WP_000730343.1 type II secretion system protein N -
  PF553_RS01540 (PF553_01540) - 315015..315851 (+) 837 WP_000870031.1 type II secretion system protein N -
  PF553_RS01545 (PF553_01545) gspD 315893..318169 (+) 2277 WP_001196437.1 type II secretion system secretin GspD -
  PF553_RS01550 (PF553_01550) - 318210..318839 (+) 630 WP_000219974.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=773171 PF553_RS01530 WP_000801427.1 313615..313941(+) (hns) [Acinetobacter baumannii strain 2022CK-00317]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=773171 PF553_RS01530 WP_000801427.1 313615..313941(+) (hns) [Acinetobacter baumannii strain 2022CK-00317]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1