Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   QSG85_RS03020 Genome accession   NZ_CP127906
Coordinates   625231..625746 (-) Length   171 a.a.
NCBI ID   WP_280033887.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SAAb472     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 620231..630746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG85_RS02995 (QSG85_02990) - 620778..622421 (+) 1644 WP_000281766.1 nitrite/sulfite reductase -
  QSG85_RS03000 (QSG85_02995) - 622414..622899 (+) 486 WP_000935252.1 DUF934 domain-containing protein -
  QSG85_RS03005 (QSG85_03000) - 622981..623334 (+) 354 WP_000457779.1 multidrug efflux SMR transporter -
  QSG85_RS03010 (QSG85_03005) - 623377..623820 (-) 444 WP_001176580.1 VOC family protein -
  QSG85_RS03015 (QSG85_03010) - 623947..625122 (-) 1176 WP_000129961.1 acetyl-CoA C-acyltransferase -
  QSG85_RS03020 (QSG85_03015) fimT 625231..625746 (-) 516 WP_280033887.1 GspH/FimT family pseudopilin Machinery gene
  QSG85_RS03025 (QSG85_03020) omp38 626128..627198 (+) 1071 WP_000777878.1 outer membrane protein Omp38 -
  QSG85_RS03030 (QSG85_03025) - 627324..627467 (-) 144 WP_162138624.1 hypothetical protein -
  QSG85_RS03035 (QSG85_03030) - 627486..628691 (-) 1206 WP_280033889.1 RtcB family protein -
  QSG85_RS03040 (QSG85_03035) - 628968..630428 (-) 1461 WP_000004971.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19663.91 Da        Isoelectric Point: 8.4883

>NTDB_id=773168 QSG85_RS03020 WP_280033887.1 625231..625746(-) (fimT) [Acinetobacter baumannii strain SAAb472]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSYGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=773168 QSG85_RS03020 WP_280033887.1 625231..625746(-) (fimT) [Acinetobacter baumannii strain SAAb472]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGCCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTATGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.373

97.076

0.421