Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   PF550_RS16215 Genome accession   NZ_CP115641
Coordinates   3397987..3398871 (-) Length   294 a.a.
NCBI ID   WP_000914774.1    Uniprot ID   N9LGJ0
Organism   Acinetobacter baumannii strain 2022CK-00251     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3392987..3403871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF550_RS16200 (PF550_16200) miaB 3394834..3396285 (+) 1452 WP_281691107.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  PF550_RS16205 (PF550_16205) - 3396323..3397411 (+) 1089 WP_000122983.1 PhoH family protein -
  PF550_RS16210 (PF550_16210) ybeY 3397421..3397897 (+) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  PF550_RS16215 (PF550_16215) tonB2 3397987..3398871 (-) 885 WP_000914774.1 energy transducer TonB Machinery gene
  PF550_RS16220 (PF550_16220) - 3399102..3399773 (+) 672 WP_001193955.1 hypothetical protein -
  PF550_RS16225 (PF550_16225) - 3399931..3400644 (+) 714 WP_000201542.1 DUF3108 domain-containing protein -
  PF550_RS16230 (PF550_16230) - 3400717..3401292 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  PF550_RS16235 (PF550_16235) wrbA 3401345..3401938 (-) 594 WP_001183345.1 NAD(P)H:quinone oxidoreductase -
  PF550_RS16240 (PF550_16240) - 3402226..3403473 (+) 1248 WP_000893468.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33622.48 Da        Isoelectric Point: 9.0935

>NTDB_id=773147 PF550_RS16215 WP_000914774.1 3397987..3398871(-) (tonB2) [Acinetobacter baumannii strain 2022CK-00251]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=773147 PF550_RS16215 WP_000914774.1 3397987..3398871(-) (tonB2) [Acinetobacter baumannii strain 2022CK-00251]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCTGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGCCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCAGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LGJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

100

100

1