Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   PF550_RS01475 Genome accession   NZ_CP115641
Coordinates   299897..300223 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain 2022CK-00251     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 294897..305223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF550_RS01450 (PF550_01450) hemC 295514..296431 (+) 918 WP_031956197.1 hydroxymethylbilane synthase -
  PF550_RS01455 (PF550_01455) - 296436..297203 (+) 768 WP_000897415.1 uroporphyrinogen-III synthase -
  PF550_RS01460 (PF550_01460) - 297212..298051 (+) 840 WP_001230201.1 hypothetical protein -
  PF550_RS01465 (PF550_01465) - 298061..299254 (+) 1194 WP_000681774.1 hypothetical protein -
  PF550_RS01470 (PF550_01470) - 299262..299702 (+) 441 WP_024432422.1 thioesterase family protein -
  PF550_RS01475 (PF550_01475) hns 299897..300223 (+) 327 WP_000801427.1 H-NS histone family protein Regulator
  PF550_RS01480 (PF550_01480) gspN 300554..301297 (+) 744 WP_000730343.1 type II secretion system protein N -
  PF550_RS01485 (PF550_01485) - 301297..302133 (+) 837 WP_000870031.1 type II secretion system protein N -
  PF550_RS01490 (PF550_01490) gspD 302175..304451 (+) 2277 WP_001196437.1 type II secretion system secretin GspD -
  PF550_RS01495 (PF550_01495) - 304492..305121 (+) 630 WP_000219974.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=773124 PF550_RS01475 WP_000801427.1 299897..300223(+) (hns) [Acinetobacter baumannii strain 2022CK-00251]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=773124 PF550_RS01475 WP_000801427.1 299897..300223(+) (hns) [Acinetobacter baumannii strain 2022CK-00251]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1