Detailed information NTG0773089

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PJZ59_RS05205
• Genome accession: NZ_CP127848
• Coordinates: 1065358..1066350 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MB7671
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1060358..1071350

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PJZ59_RS05175 (PJZ59_05175)	ispD	1060419..1061129 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PJZ59_RS05180 (PJZ59_05180)	ispF	1061129..1061608 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PJZ59_RS05185 (PJZ59_05185)	truD	1061605..1062654 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
PJZ59_RS05190 (PJZ59_05190)	surE	1062635..1063396 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
PJZ59_RS05195 (PJZ59_05195)	pcm	1063390..1064016 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PJZ59_RS05200 (PJZ59_05200)	nlpD	1064201..1065295 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
PJZ59_RS05205 (PJZ59_05205)	rpoS	1065358..1066350 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PJZ59_RS05210 (PJZ59_05210)	ygbN	1066444..1067808 (-)	1365	WP_000104456.1	GntP family transporter	-
PJZ59_RS05215 (PJZ59_05215)	ygbM	1067897..1068673 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
PJZ59_RS05220 (PJZ59_05220)	ygbL	1068678..1069316 (-)	639	WP_001278994.1	aldolase	-
PJZ59_RS05225 (PJZ59_05225)	otnK	1069313..1070575 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=773089 PJZ59_RS05205 WP_000081550.1 1065358..1066350(+) (rpoS) [Escherichia coli strain MB7671]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=773089 PJZ59_RS05205 WP_000081550.1 1065358..1066350(+) (rpoS) [Escherichia coli strain MB7671]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715