Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QRT07_RS14345 Genome accession   NZ_CP127846
Coordinates   3072276..3073133 (-) Length   285 a.a.
NCBI ID   WP_025634998.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP16     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3067276..3078133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRT07_RS14320 (QRT07_14320) pyrE 3068247..3068888 (-) 642 WP_025635001.1 orotate phosphoribosyltransferase -
  QRT07_RS14325 (QRT07_14325) rph 3068993..3069709 (-) 717 WP_025635000.1 ribonuclease PH -
  QRT07_RS14330 (QRT07_14330) - 3069924..3070790 (+) 867 WP_025634999.1 YicC/YloC family endoribonuclease -
  QRT07_RS14335 (QRT07_14335) - 3070845..3071270 (-) 426 WP_005458957.1 phosphate-starvation-inducible PsiE family protein -
  QRT07_RS14340 (QRT07_14340) - 3071400..3072239 (-) 840 WP_005458953.1 ABC transporter ATP-binding protein -
  QRT07_RS14345 (QRT07_14345) amiE 3072276..3073133 (-) 858 WP_025634998.1 ABC transporter ATP-binding protein Regulator
  QRT07_RS14350 (QRT07_14350) - 3073143..3074969 (-) 1827 WP_024703486.1 extracellular solute-binding protein -
  QRT07_RS14355 (QRT07_14355) - 3075008..3076051 (-) 1044 WP_015296095.1 ABC transporter permease subunit -
  QRT07_RS14360 (QRT07_14360) - 3076053..3077078 (-) 1026 WP_005458995.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31622.70 Da        Isoelectric Point: 4.4929

>NTDB_id=773060 QRT07_RS14345 WP_025634998.1 3072276..3073133(-) (amiE) [Vibrio parahaemolyticus strain VP16]
MENDVILSVKDLEVEFITDDGPVKVLHGVNFDVRAGRTLGLVGESGSGKSVTSMSIMGLLPKPYGNIVNGEVNYRGTNLV
SLPAEEMYAMRGDRISIIFQDPMTALNPVHTIGRQLCEVLELHRPELGKKERESYAVEMLVKVKIPMPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQEETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEK
AEIFELFDNPQHPYTERLMGLMPSLDNEPKQMIDIKPIDASMFAS

Nucleotide


Download         Length: 858 bp        

>NTDB_id=773060 QRT07_RS14345 WP_025634998.1 3072276..3073133(-) (amiE) [Vibrio parahaemolyticus strain VP16]
ATGGAAAACGATGTAATTTTGAGTGTAAAAGATCTCGAAGTGGAATTCATCACGGATGATGGCCCGGTAAAAGTACTCCA
TGGCGTGAACTTTGATGTTCGCGCAGGACGAACGCTCGGTCTCGTTGGTGAGTCTGGCAGTGGTAAGAGCGTGACCTCCA
TGTCCATCATGGGACTGTTGCCAAAGCCTTACGGCAATATTGTTAATGGTGAAGTTAACTACCGAGGTACCAATCTGGTG
TCGCTACCAGCGGAAGAAATGTACGCCATGCGCGGCGACCGCATTTCGATCATTTTCCAAGACCCAATGACGGCGTTGAA
TCCAGTGCATACCATTGGCCGCCAACTGTGCGAAGTGTTGGAATTACACCGTCCTGAGTTAGGTAAAAAAGAGCGCGAAT
CCTACGCGGTAGAAATGCTGGTTAAAGTGAAAATTCCAATGCCAGAAAAGCGCCTCAACGAATACCCACACAACCTATCT
GGTGGTATGCGCCAGCGCGTGATGATCGCAATGGCACTCGCATGTAAACCAGATATCTTGATTTGTGATGAGCCAACGAC
AGCACTGGATGTAACGGTACAGGCGTCTATCCTTGAACTAATGAATGAACTTCAAGAAGAAACGGGCATGGCAATGATCT
TCATTACTCATGATTTAGGCGTAGTCGCTGAAGTGTGTGATGACGTTGCGGTAATGTATGGTGGTCGTATTGTCGAAAAA
GCGGAGATTTTTGAGCTGTTTGACAATCCGCAGCACCCTTACACGGAACGTTTGATGGGCTTAATGCCAAGTTTGGACAA
CGAACCTAAGCAGATGATTGATATCAAACCAATCGATGCCAGCATGTTTGCTAGCTAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-273)

ABC transporter (ABC_tran)

(26-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

48.582

98.947

0.481
  amiE Streptococcus thermophilus LMD-9

48.582

98.947

0.481
  amiE Streptococcus salivarius strain HSISS4

48.582

98.947

0.481
  oppD Streptococcus mutans UA159

50.752

93.333

0.474
  amiF Streptococcus salivarius strain HSISS4

39.464

91.579

0.361