Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   PF552_RS17615 Genome accession   NZ_CP115632
Coordinates   3656517..3656843 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain 2022CK-00063     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3651517..3661843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF552_RS17595 (PF552_17595) - 3651617..3652246 (-) 630 WP_000219974.1 FHA domain-containing protein -
  PF552_RS17600 (PF552_17600) gspD 3652287..3654563 (-) 2277 WP_031959801.1 type II secretion system secretin GspD -
  PF552_RS17605 (PF552_17605) - 3654605..3655441 (-) 837 WP_000870031.1 type II secretion system protein N -
  PF552_RS17610 (PF552_17610) gspN 3655441..3656184 (-) 744 WP_000730343.1 type II secretion system protein N -
  PF552_RS17615 (PF552_17615) hns 3656517..3656843 (-) 327 WP_000801427.1 H-NS histone family protein Regulator
  PF552_RS17620 (PF552_17620) - 3657038..3657478 (-) 441 WP_000661569.1 thioesterase family protein -
  PF552_RS17625 (PF552_17625) - 3657486..3658679 (-) 1194 WP_000681780.1 membrane protein -
  PF552_RS17630 (PF552_17630) - 3658689..3659528 (-) 840 WP_001230201.1 hypothetical protein -
  PF552_RS17635 (PF552_17635) - 3659537..3660304 (-) 768 WP_031959800.1 uroporphyrinogen-III synthase -
  PF552_RS17640 (PF552_17640) hemC 3660309..3661226 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=772988 PF552_RS17615 WP_000801427.1 3656517..3656843(-) (hns) [Acinetobacter baumannii strain 2022CK-00063]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=772988 PF552_RS17615 WP_000801427.1 3656517..3656843(-) (hns) [Acinetobacter baumannii strain 2022CK-00063]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1