Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QRT07_RS00250 Genome accession   NZ_CP127846
Coordinates   54620..56455 (+) Length   611 a.a.
NCBI ID   WP_020904454.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 49620..61455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRT07_RS00230 (QRT07_00230) ggt 50037..51797 (-) 1761 WP_020904451.1 gamma-glutamyltransferase -
  QRT07_RS00235 (QRT07_00235) - 51908..52567 (-) 660 WP_025635193.1 LysE family translocator -
  QRT07_RS00240 (QRT07_00240) - 52659..53456 (-) 798 WP_025635194.1 AraC family transcriptional regulator -
  QRT07_RS00245 (QRT07_00245) rarD 53531..54445 (-) 915 WP_025635195.1 EamA family transporter RarD -
  QRT07_RS00250 (QRT07_00250) recQ 54620..56455 (+) 1836 WP_020904454.1 ATP-dependent DNA helicase RecQ Machinery gene
  QRT07_RS00255 (QRT07_00255) - 56465..56770 (+) 306 WP_005458579.1 DUF3630 family protein -
  QRT07_RS00260 (QRT07_00260) - 57064..57732 (+) 669 WP_005497391.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  QRT07_RS00265 (QRT07_00265) gppA 57929..59422 (-) 1494 WP_005480964.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase -
  QRT07_RS00270 (QRT07_00270) rhlB 59442..60755 (-) 1314 WP_005458582.1 ATP-dependent RNA helicase RhlB -
  QRT07_RS00275 (QRT07_00275) trxA 60867..61193 (+) 327 WP_005458583.1 thioredoxin TrxA -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69254.16 Da        Isoelectric Point: 6.8897

>NTDB_id=772984 QRT07_RS00250 WP_020904454.1 54620..56455(+) (recQ) [Vibrio parahaemolyticus strain VP16]
MTSTLLAEQSDSPVTPQRVLEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCYQIPALVRNGITLVISPLISL
MKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLKLVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHD
FRPEYAALGQLKQHFSHVPFMALTATADDATRRDILERLRLHEPHVHLGSFDRPNIRYNLVEKHKPISQIIRYLDTQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPC
GNCDICLDPPKHFDATEEARKALSCVYRVNQSFGMTYVVEVLRGMQNIRVREHGHDKISTYGIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVSLELAVPRLDTAARAAKSDKLTSKNYDKKLFAKLRKLRKSIADEDGLPPYV
VFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHITHHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=772984 QRT07_RS00250 WP_020904454.1 54620..56455(+) (recQ) [Vibrio parahaemolyticus strain VP16]
ATGACCTCAACTTTGTTAGCCGAACAATCAGACTCACCTGTAACGCCTCAACGTGTGTTGGAGGAAGTTTTCGGTTATCA
AACGTTTCGTGATGGCCAGCAAGAGGTCATCGAATCGGCGGTCGAGGGCAAAGACAGTCTGGTGATCATGCCGACAGGTG
GTGGCAAATCTCTTTGCTATCAGATACCTGCGTTGGTTCGTAATGGCATCACCTTGGTGATTTCGCCGCTGATTTCTTTG
ATGAAAGACCAGGTCGATCAGCTCAAAGCCAACGGCGTTGCGGCAGAGTGTGTGAACTCCACCATGAGTCGTGAAGAGCT
GCTGAGTGTGTATAACCGCATGCACAGCGGTCAACTCAAATTGGTTTACGTCTCACCAGAACGCGTGTTAATGCGTGACT
TCATCGAGCGACTCGAAAACCTGCCTTTGGCGATGATTGCGGTGGATGAAGCGCACTGTATCTCGCAGTGGGGACACGAT
TTCCGTCCCGAATACGCCGCGCTGGGTCAGTTAAAGCAGCATTTTTCGCATGTGCCATTTATGGCGCTCACCGCCACTGC
GGATGACGCTACACGTCGCGACATTCTTGAACGCTTACGTTTGCATGAACCTCATGTCCACTTAGGCAGTTTTGACCGTC
CGAATATCCGCTACAACCTGGTCGAGAAGCACAAGCCGATTTCTCAGATCATTCGTTATCTCGACACCCAAAAGGGCAAT
TGCGGCATCATTTACTGTGGTAGCCGTAAGAAAGTCGAAATGGTGACGGAGAAGTTGTGCAACAACCACATCCGTGCGGC
GGGCTATCATGCAGGGATGGACGCTGATGAGCGTGCTTACGTTCAAGAGGCGTTTCAGCGTGATGACATTCAAATCGTGG
TCGCGACGGTTGCCTTTGGTATGGGTATCAACAAGCCGAACGTCCGTTTTGTGGTGCACTTTGATATTCCGCGCAATATT
GAATCCTACTACCAAGAAACGGGACGAGCAGGGCGAGATGGTTTGCCTGCTGAAGCGATGATGTTGTACGACCCTGCAGA
CATCAGTTGGCTACGTCGCATGCTGGATGAAAAAGACGATGGACCGCAAAAGCAAGTAGAAAGCCATAAACTTAATGCGA
TGAGTGCCTTTGCGGAAGCGCAAACCTGTCGTCGTCAGGTTCTGCTCAACTACTTTGGTGAATACCGCGAGAAGCCTTGT
GGTAACTGCGATATCTGCCTCGATCCACCCAAACATTTTGATGCGACAGAAGAAGCGCGAAAAGCGTTGTCGTGTGTTTA
CCGCGTTAACCAAAGCTTTGGTATGACGTATGTGGTTGAGGTGCTGCGTGGTATGCAAAATATCCGCGTGCGTGAACATG
GCCACGATAAGATCTCTACATACGGCATTGGCCGCGACCACAGCCATGATTACTGGGTGAGTATCTTCCGCCAGTTAATC
CACAAAGGACTGTTGTTTCAAAACATTACTCGAAACTCGACGTTGCAATTGACCGAGGAAGCTCGACCATTATTGCGCGG
GGATGTGTCGCTCGAGCTAGCGGTTCCTCGTTTGGATACCGCAGCACGCGCTGCGAAGTCGGACAAACTGACCAGCAAAA
ACTACGATAAGAAGCTGTTTGCGAAATTACGCAAGCTGCGTAAGTCGATTGCTGATGAAGATGGCTTACCACCATACGTT
GTATTTAGTGATGCGACCTTGATTGATATGGCGGAGATTCTGCCAACGTCGTATGGCGAAATGCTGGCGGTGAGCGGGGT
AGGTCAACGTAAATTAGAAAAATATGCCGATCCATTCTTGGATCTGATTCAAGAACACATCACTCACCACGGATAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(31-189)

Helicase conserved C-terminal domain (Helicase_C)

(228-333)

HRDC domain (HRDC)

(537-603)

RQC domain (RQC)

(409-517)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.541

96.89

0.393