Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   PF552_RS16470 Genome accession   NZ_CP115632
Coordinates   3406300..3407100 (-) Length   266 a.a.
NCBI ID   WP_004738086.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00063     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3401300..3412100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF552_RS16450 (PF552_16450) - 3402365..3403063 (-) 699 WP_000058788.1 tetratricopeptide repeat protein -
  PF552_RS16455 (PF552_16455) hisS 3403092..3404384 (-) 1293 WP_000095254.1 histidine--tRNA ligase -
  PF552_RS16460 (PF552_16460) ispG 3404381..3405496 (-) 1116 WP_000572095.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  PF552_RS16465 (PF552_16465) - 3405518..3406309 (-) 792 WP_031959662.1 helix-turn-helix domain-containing protein -
  PF552_RS16470 (PF552_16470) pilF 3406300..3407100 (-) 801 WP_004738086.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  PF552_RS16475 (PF552_16475) rlmN 3407116..3408348 (-) 1233 WP_031959661.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  PF552_RS16480 (PF552_16480) ndk 3408471..3408902 (-) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  PF552_RS16485 (PF552_16485) iscX 3409016..3409216 (-) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  PF552_RS16490 (PF552_16490) - 3409316..3409867 (-) 552 WP_000669565.1 phosphatase PAP2 family protein -
  PF552_RS16495 (PF552_16495) - 3409892..3411190 (-) 1299 WP_109067365.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30094.44 Da        Isoelectric Point: 9.2307

>NTDB_id=772981 PF552_RS16470 WP_004738086.1 3406300..3407100(-) (pilF) [Acinetobacter baumannii strain 2022CK-00063]
MSTPKLKIMLCMGVAVALLASGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=772981 PF552_RS16470 WP_004738086.1 3406300..3407100(-) (pilF) [Acinetobacter baumannii strain 2022CK-00063]
TTGAGTACTCCGAAGTTGAAGATCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGGCAAGTGGTTGTCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCTCTTGACCAAGCGTTAAGTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAGCAAGAAGGCAGTAAACCCAATTTAGAAAAAGCAGAACATTACTTTAAGCGTGCAATTTCGTCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACGTATTTGTACCAAATGGAGCGTTATAATGATGCTATTGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCCTTAGAAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGCGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

100

100

1
  pilF Acinetobacter baylyi ADP1

74.231

97.744

0.726