Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   PF552_RS02375 Genome accession   NZ_CP115632
Coordinates   487934..488818 (+) Length   294 a.a.
NCBI ID   WP_031961328.1    Uniprot ID   A0AAD2U3W3
Organism   Acinetobacter baumannii strain 2022CK-00063     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 482934..493818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF552_RS02350 (PF552_02350) - 483332..484579 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  PF552_RS02355 (PF552_02355) wrbA 484867..485460 (+) 594 WP_001183355.1 NAD(P)H:quinone oxidoreductase -
  PF552_RS02360 (PF552_02360) - 485513..486088 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  PF552_RS02365 (PF552_02365) - 486161..486874 (-) 714 WP_031965182.1 DUF3108 domain-containing protein -
  PF552_RS02370 (PF552_02370) - 487032..487703 (-) 672 WP_031961329.1 hypothetical protein -
  PF552_RS02375 (PF552_02375) tonB2 487934..488818 (+) 885 WP_031961328.1 energy transducer TonB Machinery gene
  PF552_RS02380 (PF552_02380) ybeY 488908..489384 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  PF552_RS02385 (PF552_02385) - 489394..490482 (-) 1089 WP_031961327.1 PhoH family protein -
  PF552_RS02390 (PF552_02390) miaB 490520..491971 (-) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33686.53 Da        Isoelectric Point: 9.0935

>NTDB_id=772966 PF552_RS02375 WP_031961328.1 487934..488818(+) (tonB2) [Acinetobacter baumannii strain 2022CK-00063]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPTPMPSDASTGEAQLETFEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=772966 PF552_RS02375 WP_031961328.1 487934..488818(+) (tonB2) [Acinetobacter baumannii strain 2022CK-00063]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCATCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGAGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAACGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTCGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCAGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.32

100

0.993