Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   PF552_RS01680 Genome accession   NZ_CP115632
Coordinates   361339..361761 (+) Length   140 a.a.
NCBI ID   WP_031961381.1    Uniprot ID   A0A836M1M3
Organism   Acinetobacter baumannii strain 2022CK-00063     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 356339..366761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF552_RS01670 (PF552_01670) - 356696..360766 (+) 4071 WP_031961384.1 PilC/PilY family type IV pilus protein -
  PF552_RS01675 (PF552_01675) - 360776..361339 (+) 564 WP_031961383.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PF552_RS01680 (PF552_01680) pilE 361339..361761 (+) 423 WP_031961381.1 type IV pilin protein Machinery gene
  PF552_RS01685 (PF552_01685) rpsP 361908..362159 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  PF552_RS01690 (PF552_01690) rimM 362179..362727 (+) 549 WP_031961380.1 ribosome maturation factor RimM -
  PF552_RS01695 (PF552_01695) trmD 362773..363513 (+) 741 WP_031961379.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  PF552_RS01700 (PF552_01700) rplS 363721..364089 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  PF552_RS01705 (PF552_01705) - 364143..365084 (-) 942 WP_104131029.1 triacylglycerol lipase -
  PF552_RS01710 (PF552_01710) - 365199..366233 (-) 1035 WP_264229116.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15404.52 Da        Isoelectric Point: 7.7994

>NTDB_id=772963 PF552_RS01680 WP_031961381.1 361339..361761(+) (pilE) [Acinetobacter baumannii strain 2022CK-00063]
MKKYEGFTLIELMIVVAIIAILAAIAYPSYTQYKIRTNRADVQSEMMQTAQRLQSYYVINHNYTSATLNNGLTTKDYPAS
NPIYTIALVTNSQTWTLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 423 bp        

>NTDB_id=772963 PF552_RS01680 WP_031961381.1 361339..361761(+) (pilE) [Acinetobacter baumannii strain 2022CK-00063]
ATGAAAAAATATGAAGGTTTTACCCTCATAGAGCTAATGATTGTGGTTGCTATTATTGCAATTTTGGCAGCAATTGCTTA
CCCCTCCTATACACAATATAAAATTCGGACGAATCGTGCAGATGTGCAAAGTGAAATGATGCAAACCGCACAACGTCTAC
AAAGTTACTATGTGATTAATCATAATTATACTAGTGCTACACTCAATAATGGTTTAACTACTAAAGATTATCCAGCATCC
AATCCAATTTATACTATTGCACTAGTCACAAACTCTCAAACATGGACGCTTACTGCAACTCCTATTTCTACTAGCTCACA
AGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCATTATCTG
CTTCATCGAGTTGGACCGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-114)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836M1M3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

64.493

98.571

0.636
  comF Acinetobacter baylyi ADP1

58.156

100

0.586
  pilA Pseudomonas aeruginosa PAK

35.374

100

0.371