Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QRS93_RS07020 Genome accession   NZ_CP127842
Coordinates   1421133..1421795 (-) Length   220 a.a.
NCBI ID   WP_003057999.1    Uniprot ID   A0ABU0A4Z4
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1416133..1426795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRS93_RS07005 (QRS93_07005) sodA 1417087..1417692 (-) 606 WP_003054499.1 superoxide dismutase SodA -
  QRS93_RS07010 (QRS93_07010) holA 1417782..1418828 (-) 1047 WP_015017201.1 DNA polymerase III subunit delta -
  QRS93_RS07015 (QRS93_07015) comEC/celB 1418909..1421152 (-) 2244 WP_015017202.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QRS93_RS07020 (QRS93_07020) comEA 1421133..1421795 (-) 663 WP_003057999.1 helix-hairpin-helix domain-containing protein Machinery gene
  QRS93_RS07025 (QRS93_07025) - 1422192..1422932 (-) 741 WP_003062277.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  QRS93_RS07030 (QRS93_07030) - 1423050..1423826 (+) 777 WP_148275174.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QRS93_RS07035 (QRS93_07035) - 1423816..1424094 (+) 279 WP_003061674.1 GIY-YIG nuclease family protein -
  QRS93_RS07040 (QRS93_07040) - 1424118..1426118 (-) 2001 WP_003061221.1 potassium transporter Kup -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24080.46 Da        Isoelectric Point: 5.8872

>NTDB_id=772944 QRS93_RS07020 WP_003057999.1 1421133..1421795(-) (comEA) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37]
MIDDLLTKGTNSLKKVYSLPRLIGVVLAIFLILTLSFVIWGKEQSQTKLPIVSTSSSIQQPASEEKKYSSEESNILVDLK
GAVQQEGVYKLRANSRVRDVIELAGGLTQEADRHAVNFAEKLVDEQVVYVAKQGEDISVLPNASSAGKANAEMSNSTKVN
INKANLEELQRISGIGVKRAQDILETRDSLGGFKTLDDLRQVSGIGEKTLEKLKHELSLD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=772944 QRS93_RS07020 WP_003057999.1 1421133..1421795(-) (comEA) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37]
ATGATAGATGACTTGTTAACTAAAGGAACAAATAGCTTGAAAAAGGTTTATTCTCTGCCACGCTTGATTGGTGTTGTGTT
AGCCATTTTTCTGATACTAACCCTAAGTTTTGTTATCTGGGGCAAAGAGCAGAGTCAAACAAAACTTCCTATTGTATCAA
CTTCTTCTTCCATACAACAGCCAGCTAGTGAGGAAAAAAAGTATTCTTCAGAAGAGAGTAATATTTTAGTGGATTTAAAA
GGAGCCGTACAACAGGAGGGAGTTTATAAGCTCAGGGCTAATAGCCGTGTGCGCGATGTCATTGAATTAGCTGGGGGACT
TACTCAGGAAGCTGATAGACATGCTGTTAATTTTGCAGAAAAACTGGTGGATGAGCAGGTTGTGTATGTGGCTAAGCAGG
GTGAAGACATTTCTGTCTTGCCAAATGCCTCCTCAGCAGGTAAAGCTAACGCAGAAATGTCTAACTCAACAAAGGTGAAT
ATCAATAAAGCAAATTTAGAGGAGTTACAACGTATTTCGGGCATTGGTGTAAAAAGGGCTCAGGATATTCTTGAGACGAG
AGACAGTCTAGGTGGCTTTAAAACGTTAGATGATCTTAGACAGGTATCTGGAATTGGTGAAAAAACACTTGAGAAATTGA
AACATGAACTATCGTTGGACTAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(77-129)

Helix-hairpin-helix motif (HHH_3)

(155-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

38.389

95.909

0.368