Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   QRO24_RS11445 Genome accession   NZ_CP127829
Coordinates   2396246..2399080 (-) Length   944 a.a.
NCBI ID   WP_409025764.1    Uniprot ID   -
Organism   Gallibacterium anatis strain OH/Ck/12965/20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2391246..2404080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRO24_RS11415 (QRO24_11360) - 2392086..2392391 (+) 306 WP_013744838.1 IS3 family transposase -
  QRO24_RS11420 (QRO24_11365) - 2392394..2393011 (+) 618 Protein_2208 IS3 family transposase -
  QRO24_RS11425 (QRO24_11370) - 2392978..2393223 (+) 246 WP_409025762.1 integrase core domain-containing protein -
  QRO24_RS11430 (QRO24_11375) - 2393278..2393952 (-) 675 WP_335796634.1 RloB family protein -
  QRO24_RS11435 (QRO24_11380) - 2393952..2395256 (-) 1305 WP_409025763.1 AAA family ATPase -
  QRO24_RS11440 (QRO24_11385) - 2395375..2395959 (-) 585 WP_021462093.1 hypothetical protein -
  QRO24_RS11445 (QRO24_11390) uvrA 2396246..2399080 (-) 2835 WP_409025764.1 excinuclease ABC subunit UvrA Machinery gene
  QRO24_RS11450 (QRO24_11395) ssb 2399222..2399737 (+) 516 WP_018347305.1 single-stranded DNA-binding protein Machinery gene
  QRO24_RS11455 (QRO24_11400) - 2399834..2400376 (-) 543 WP_409025765.1 LysR substrate-binding domain-containing protein -
  QRO24_RS11460 (QRO24_11405) - 2400407..2400844 (+) 438 Protein_2216 amidophosphoribosyltransferase -
  QRO24_RS11465 (QRO24_11410) - 2400844..2401419 (+) 576 WP_409025766.1 UbiX family flavin prenyltransferase -
  QRO24_RS11470 (QRO24_11415) - 2401783..2402193 (+) 411 WP_021462089.1 DUF805 domain-containing protein -
  QRO24_RS11475 (QRO24_11420) - 2402324..2403391 (+) 1068 WP_409025767.1 DarT ssDNA thymidine ADP-ribosyltransferase family protein -

Sequence

Protein


Download         Length: 944 a.a.        Molecular weight: 104893.60 Da        Isoelectric Point: 6.5827

>NTDB_id=772870 QRO24_RS11445 WP_409025764.1 2396246..2399080(-) (uvrA) [Gallibacterium anatis strain OH/Ck/12965/20]
MDNIEIRGARTHNLKNINLTIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTITEVYDYLRLLFARVGEPRCPTHNTPLTAQTISQMVDKILSLPEGSRMMLLAPVVKARKG
EHTKLLDNIAAQGYIRARIDGEICDLSDPPQLELQKKHTIEVIVDRFKIRPELSSRLAESLETALELSGGIVVVANMDDS
SAEELVFSANFACPHCGYSLPELEPRMFSFNNPAGACPTCDGLGIQQYFDEHRVVQNPSLSLAGGAIRGWDRRNFYYYQM
LTSLAHHYHFDIEEPFEELPQKIQHLVLHGSGHEKIEFQYMNDRGDTIVRHHPFEGVLNNMARRYKETESMSVREDLAKY
ISTRPCQTCHGSRLKEEARHVFIGETTLSQISEMSIGEALHHFEQLQFEGQKAKIAEKILKEIKERLQFLVNVGLEYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRDLGNTVIVVEHDEDAIRIADHIIDI
GPGAGVHGGEVIAQGTAQQIMQDPNSLTGRFLSGKEKIDIPAARTPIKPEKILRLIGASGNNLKNVDLEIPVGLFTCITG
VSGSGKSTLINDTLFPIAQNALNRAENQQHAPFKAIEGLEFFDKVINIDQSPIGRTPRSNPATYTGVFTPIRELFAGVPE
ARARGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIRYKGKTIHQVLEMTVEEAREFF
DAVPMIARKLQTLIDVGLSYIRLGQASTTLSGGEAQRVKLASELSKRDTGNTLYILDEPTTGLHFADIKQLLEVLHRLRD
QGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEIIAKGTPEQVAAMPHSHTARFLKPILDKQK

Nucleotide


Download         Length: 2835 bp        

>NTDB_id=772870 QRO24_RS11445 WP_409025764.1 2396246..2399080(-) (uvrA) [Gallibacterium anatis strain OH/Ck/12965/20]
ATGGACAATATCGAAATTCGGGGCGCAAGAACCCATAATTTAAAAAATATTAATTTAACCATTCCACGCAACAAATTGGT
GGTAATCACCGGTTTATCCGGCTCGGGAAAGTCTTCGTTAGCATTTGACACCCTCTATGCCGAAGGGCAGCGGCGTTATG
TGGAATCACTTTCCGCTTATGCTCGCCAGTTTCTCTCTTTGATGGAAAAACCGGATGTGGATCATATCGAAGGTTTATCA
CCGGCGATCTCGATTGAACAGAAATCCACCTCACATAACCCTCGATCCACTGTCGGTACCATTACCGAAGTTTATGATTA
TTTAAGACTGCTGTTTGCTCGTGTCGGCGAACCACGTTGCCCGACACATAACACCCCATTAACGGCACAAACTATCAGTC
AAATGGTGGATAAAATTCTTTCTTTGCCGGAAGGCAGCCGAATGATGTTGCTTGCGCCGGTCGTGAAAGCACGCAAAGGT
GAACACACCAAATTGTTGGATAACATTGCCGCACAAGGCTATATTCGCGCCAGAATTGACGGCGAAATCTGTGATCTCTC
CGATCCGCCACAACTGGAATTGCAAAAGAAACACACCATTGAAGTGATTGTCGATCGCTTCAAAATCCGCCCTGAATTAT
CAAGCCGTTTAGCGGAATCATTGGAAACCGCACTGGAACTTTCCGGCGGTATTGTAGTGGTCGCCAATATGGATGACAGC
AGTGCCGAAGAGCTGGTTTTCTCTGCCAATTTTGCCTGTCCGCATTGCGGATATTCTTTGCCGGAACTAGAACCACGAAT
GTTCTCGTTTAATAATCCGGCAGGGGCTTGCCCTACTTGTGACGGCTTAGGCATTCAACAATATTTTGACGAACATCGTG
TGGTGCAAAACCCAAGTTTATCCCTTGCCGGCGGTGCAATTCGTGGTTGGGATCGCCGCAATTTCTATTATTACCAAATG
CTGACCTCGCTCGCGCACCATTATCACTTTGATATTGAAGAGCCGTTTGAAGAATTACCACAAAAAATTCAACATTTGGT
GTTGCACGGTTCCGGCCACGAAAAAATTGAATTTCAATATATGAACGATCGTGGCGACACCATCGTGCGTCATCACCCAT
TTGAGGGAGTGTTGAACAATATGGCGCGCCGCTACAAAGAAACCGAGTCAATGTCGGTGCGTGAAGATTTGGCAAAATAT
ATCAGCACCCGTCCTTGCCAAACTTGCCACGGTTCTCGTCTAAAAGAAGAGGCTCGCCACGTCTTTATCGGCGAAACCAC
GTTGTCACAAATTTCTGAAATGAGTATCGGCGAAGCATTACACCATTTTGAACAATTACAGTTTGAAGGGCAAAAAGCCA
AAATTGCGGAAAAAATCTTAAAAGAGATTAAAGAACGGCTTCAGTTTTTAGTCAATGTCGGTCTGGAATATCTCTCTTTA
TCACGTTCCGCCGAAACACTCTCCGGCGGTGAAGCACAGCGTATTCGTCTTGCCAGCCAAATCGGTGCCGGCTTGGTCGG
CGTGATGTATGTGTTGGACGAACCTTCTATCGGCTTGCATCAACGAGATAATGAACGGTTGTTAAATACCTTGATTCACC
TGAGAGATTTAGGCAATACCGTGATTGTGGTTGAACACGACGAGGATGCCATTCGTATCGCCGACCACATCATCGATATT
GGGCCGGGAGCCGGCGTACACGGCGGTGAAGTGATTGCACAAGGCACAGCACAACAGATTATGCAAGATCCGAATTCGCT
TACCGGACGTTTTCTTTCCGGCAAAGAGAAAATCGACATTCCGGCAGCAAGAACACCGATCAAACCGGAAAAAATATTAC
GCCTAATCGGGGCGAGCGGTAACAATTTAAAAAATGTCGATTTAGAAATTCCGGTCGGTTTATTCACCTGTATCACCGGC
GTTTCCGGCTCAGGGAAATCAACCTTAATTAACGATACCTTATTCCCAATTGCACAAAATGCGCTTAACCGTGCTGAAAA
TCAGCAACACGCTCCCTTTAAAGCAATTGAAGGATTAGAGTTTTTTGATAAAGTAATCAATATTGATCAAAGCCCAATCG
GACGCACGCCAAGATCCAATCCGGCAACTTATACCGGTGTGTTTACGCCTATTCGTGAGCTTTTCGCCGGCGTACCGGAA
GCGCGCGCAAGAGGATATAATCCGGGACGCTTCAGTTTTAATGTGCGTGGCGGTCGTTGTGAAGCCTGCCAAGGAGACGG
TGTGATTAAAGTCGAAATGCACTTTCTGCCGGATATTTATGTGCCGTGCGATCAATGTAAGGGCAAACGCTACAATCGCG
AAACATTGGAAATCCGTTATAAAGGCAAAACCATTCATCAAGTGTTGGAAATGACGGTCGAAGAAGCACGCGAATTTTTT
GATGCCGTGCCAATGATCGCGCGCAAATTACAAACCTTAATTGATGTCGGCTTGTCTTACATCCGTCTTGGTCAGGCTTC
CACCACCTTGTCGGGCGGTGAAGCACAACGGGTTAAACTGGCATCGGAATTGTCTAAACGTGATACCGGAAACACACTCT
ATATTCTTGACGAACCGACAACCGGATTGCATTTTGCCGACATCAAACAATTATTGGAAGTGCTGCATCGCTTACGTGAT
CAAGGCAACACCATTGTTGTGATTGAACACAATCTGGATGTTATTAAAACTGCCGATTGGATTGTCGATTTAGGGCCGGA
AGGTGGCAGCGGCGGCGGCGAAATCATCGCCAAAGGCACGCCGGAACAAGTCGCAGCAATGCCTCATTCGCACACCGCAA
GGTTTTTAAAACCGATTTTGGATAAACAAAAATAG

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-399)

UvrA interaction domain (UvrA_inter)

(130-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.553

99.576

0.573
  uvrA Streptococcus pneumoniae TIGR4

57.553

99.576

0.573
  uvrA Streptococcus pneumoniae D39

57.553

99.576

0.573