Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   PF449_RS17380 Genome accession   NZ_CP115623
Coordinates   3613677..3614204 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain 2022CK-00340     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3608677..3619204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF449_RS17360 (PF449_17360) - 3608866..3609741 (-) 876 WP_031961395.1 hypothetical protein -
  PF449_RS17365 (PF449_17365) aroB 3609757..3610839 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  PF449_RS17370 (PF449_17370) aroK 3610868..3611437 (-) 570 WP_000643712.1 shikimate kinase AroK -
  PF449_RS17375 (PF449_17375) pilQ 3611449..3613614 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  PF449_RS17380 (PF449_17380) pilP 3613677..3614204 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  PF449_RS17385 (PF449_17385) pilO 3614215..3614955 (-) 741 WP_000076106.1 type 4a pilus biogenesis protein PilO Machinery gene
  PF449_RS17390 (PF449_17390) pilN 3614952..3615593 (-) 642 WP_031961396.1 PilN domain-containing protein Machinery gene
  PF449_RS17395 (PF449_17395) pilM 3615593..3616651 (-) 1059 WP_031961398.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=772860 PF449_RS17380 WP_000695065.1 3613677..3614204(-) (pilP) [Acinetobacter baumannii strain 2022CK-00340]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=772860 PF449_RS17380 WP_000695065.1 3613677..3614204(-) (pilP) [Acinetobacter baumannii strain 2022CK-00340]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGCAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTTTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714