Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QRO24_RS06870 Genome accession   NZ_CP127829
Coordinates   1418215..1418817 (-) Length   200 a.a.
NCBI ID   WP_013746785.1    Uniprot ID   A0A0A2XW54
Organism   Gallibacterium anatis strain OH/Ck/12965/20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1413215..1423817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRO24_RS06845 (QRO24_06805) - 1415542..1416303 (-) 762 WP_013746790.1 hypothetical protein -
  QRO24_RS06850 (QRO24_06810) - 1416300..1416872 (-) 573 WP_013746789.1 ComF family protein -
  QRO24_RS06855 (QRO24_06815) - 1416914..1417168 (-) 255 WP_013746788.1 hypothetical protein -
  QRO24_RS06860 (QRO24_06820) - 1417236..1417679 (-) 444 WP_013746787.1 GNAT family N-acetyltransferase -
  QRO24_RS06865 (QRO24_06825) - 1417679..1418116 (-) 438 WP_013746786.1 DNA polymerase III subunit chi -
  QRO24_RS06870 (QRO24_06830) recR 1418215..1418817 (-) 603 WP_013746785.1 recombination mediator RecR Machinery gene
  QRO24_RS06875 (QRO24_06835) - 1418890..1419219 (-) 330 WP_013746784.1 YbaB/EbfC family nucleoid-associated protein -
  QRO24_RS06880 (QRO24_06840) dnaX 1419292..1421460 (-) 2169 WP_409025488.1 DNA polymerase III subunit gamma/tau -
  QRO24_RS06885 (QRO24_06845) apt 1421482..1422027 (-) 546 WP_409025489.1 adenine phosphoribosyltransferase -
  QRO24_RS06890 (QRO24_06850) lpxM 1422136..1423086 (-) 951 WP_409025490.1 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22153.40 Da        Isoelectric Point: 5.2907

>NTDB_id=772850 QRO24_RS06870 WP_013746785.1 1418215..1418817(-) (recR) [Gallibacterium anatis strain OH/Ck/12965/20]
MQISPLLDELMDALRCLPGVGPKSAQRMAYYLLQRDRSGAMNLAKTLTEAMAHIGHCSQCRTFTEEEVCNICNNYRRQEN
GQLCIVEMPSDIQAIEQTGQFSGRYFVLMGHLSPLDGIGPKEIGLDLLQKRLQTESFSEVILATNPTIEGDATANYIAEM
CQQYGVKVSRIAHGIPVGGELEMVDGTTLSHSFIGRRELK

Nucleotide


Download         Length: 603 bp        

>NTDB_id=772850 QRO24_RS06870 WP_013746785.1 1418215..1418817(-) (recR) [Gallibacterium anatis strain OH/Ck/12965/20]
ATGCAAATTAGTCCTTTACTTGATGAATTGATGGATGCTTTGCGTTGCCTGCCGGGAGTCGGCCCGAAATCAGCACAACG
AATGGCATATTATTTATTACAGCGTGATCGCAGCGGCGCAATGAATTTGGCTAAAACGCTGACAGAAGCGATGGCGCATA
TCGGTCATTGCAGTCAATGTCGTACTTTTACCGAAGAAGAAGTGTGTAATATTTGCAATAACTATCGCCGTCAAGAGAAT
GGGCAGTTATGCATAGTGGAAATGCCTTCCGATATTCAGGCAATTGAACAGACAGGGCAGTTTTCAGGTCGTTATTTTGT
ATTAATGGGGCATTTATCGCCATTGGATGGTATCGGACCGAAAGAGATTGGGCTAGATTTATTGCAGAAAAGATTGCAGA
CAGAATCTTTTTCTGAAGTGATTTTAGCGACTAATCCAACGATTGAAGGCGATGCCACGGCGAATTATATTGCGGAAATG
TGTCAACAGTATGGGGTAAAAGTGAGCCGCATTGCTCACGGTATTCCGGTTGGCGGTGAATTGGAAATGGTGGACGGTAC
AACGTTATCGCACTCGTTTATTGGCAGACGAGAATTGAAGTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-77)

Toprim domain (Toprim_4)

(82-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A2XW54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

45.226

99.5

0.45
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.624

98.5

0.41