NTDB

Overview

Name	tsaP	Type	Machinery gene
Locus tag	PF449_RS00975	Genome accession	NZ_CP115623
Coordinates	199030..200184 (-)	Length	384 a.a.
NCBI ID	WP_000755282.1	Uniprot ID	-
Organism	Acinetobacter baumannii strain 2022CK-00340
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 194030..205184

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PF449_RS00955 (PF449_00955)	-	195188..195841 (+)	654	WP_109067430.1	TetR/AcrR family transcriptional regulator	-
PF449_RS00960 (PF449_00960)	-	195947..196867 (+)	921	WP_000084546.1	DMT family transporter	-
PF449_RS00965 (PF449_00965)	-	197259..197828 (-)	570	WP_000633612.1	Sua5/YciO/YrdC/YwlC family protein	-
PF449_RS00970 (PF449_00970)	dprA	197879..199009 (-)	1131	WP_031959491.1	DNA-processing protein DprA	Machinery gene
PF449_RS00975 (PF449_00975)	tsaP	199030..200184 (-)	1155	WP_000755282.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
PF449_RS00980 (PF449_00980)	def	200307..200837 (+)	531	WP_001196539.1	peptide deformylase	-
PF449_RS00985 (PF449_00985)	-	200874..201302 (+)	429	WP_000231981.1	DUF2946 family protein	-
PF449_RS00990 (PF449_00990)	-	201375..203489 (+)	2115	WP_031959493.1	TonB-dependent copper receptor	-
PF449_RS00995 (PF449_00995)	-	203543..203749 (+)	207	WP_000182542.1	hypothetical protein	-
PF449_RS01000 (PF449_01000)	-	203819..205033 (-)	1215	WP_001177953.1	oxygenase MpaB family protein	-

Sequence

Protein

Download Length: 384 a.a. Molecular weight: 42336.25 Da Isoelectric Point: 8.5816

                                >NTDB_id=772828 PF449_RS00975 WP_000755282.1 199030..200184(-) (tsaP) [Acinetobacter baumannii strain 2022CK-00340]

MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP

EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE

NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS

SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGVQVGQ

VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide

Download Length: 1155 bp

                                >NTDB_id=772828 PF449_RS00975 WP_000755282.1 199030..200184(-) (tsaP) [Acinetobacter baumannii strain 2022CK-00340]

ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCCTTGGCGCTCTGTAC

AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAATCATAATCCACCCTCACTTAAAAGTAATGCAC

CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT

GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA

TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTAGGTATTATTCGCCGCTACACTGGTCAAACCACAAACC

TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG

AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG

AAAAGGCCAGACCATTTACGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCCGTTTACCGAGAAGGTGAACCTT

ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTATCT

TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA

AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACAGATGGTGGCAAGATTATTCGTGTCA

TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACCCAGGGCGTTCAAGTAGGCCAA

GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT

TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG

GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
tsaP	Acinetobacter baumannii D1279779	99.219	100	0.992

Detailed information NTG0772828