Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   PF364_RS16530 Genome accession   NZ_CP115621
Coordinates   3453345..3454229 (-) Length   294 a.a.
NCBI ID   WP_031961328.1    Uniprot ID   A0AAD2U3W3
Organism   Acinetobacter baumannii strain 2022CK-00480     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3448345..3459229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF364_RS16515 (PF364_16515) miaB 3450192..3451643 (+) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  PF364_RS16520 (PF364_16520) - 3451681..3452769 (+) 1089 WP_031961327.1 PhoH family protein -
  PF364_RS16525 (PF364_16525) ybeY 3452779..3453255 (+) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  PF364_RS16530 (PF364_16530) tonB2 3453345..3454229 (-) 885 WP_031961328.1 energy transducer TonB Machinery gene
  PF364_RS16535 (PF364_16535) - 3454460..3455131 (+) 672 WP_031961329.1 hypothetical protein -
  PF364_RS16540 (PF364_16540) - 3455289..3456002 (+) 714 WP_031965182.1 DUF3108 domain-containing protein -
  PF364_RS16545 (PF364_16545) - 3456075..3456650 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  PF364_RS16550 (PF364_16550) wrbA 3456703..3457296 (-) 594 WP_001183355.1 NAD(P)H:quinone oxidoreductase -
  PF364_RS16555 (PF364_16555) - 3457584..3458831 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33686.53 Da        Isoelectric Point: 9.0935

>NTDB_id=772815 PF364_RS16530 WP_031961328.1 3453345..3454229(-) (tonB2) [Acinetobacter baumannii strain 2022CK-00480]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPTPMPSDASTGEAQLETFEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=772815 PF364_RS16530 WP_031961328.1 3453345..3454229(-) (tonB2) [Acinetobacter baumannii strain 2022CK-00480]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCATCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGAGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAACGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTCGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCAGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.32

100

0.993