Detailed information NTG0772809

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: PF364_RS08755
• Genome accession: NZ_CP115621
• Coordinates: 1822370..1823071 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594580.1
• Uniprot ID: A0A836YMN8
• Organism: Acinetobacter baumannii strain 2022CK-00480
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1817370..1828071

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PF364_RS08720 (PF364_08720)	kdsB	1817893..1818654 (+)	762	WP_000680701.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PF364_RS08725 (PF364_08725)	-	1818666..1819646 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
PF364_RS08730 (PF364_08730)	-	1819658..1819999 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
PF364_RS08735 (PF364_08735)	-	1820017..1820790 (+)	774	WP_000497298.1	TatD family hydrolase	-
PF364_RS08740 (PF364_08740)	-	1820828..1821436 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
PF364_RS08745 (PF364_08745)	-	1821446..1822000 (+)	555	WP_000841367.1	type II secretion system protein	-
PF364_RS08750 (PF364_08750)	xcpV	1821990..1822370 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
PF364_RS08755 (PF364_08755)	xcpW	1822370..1823071 (+)	702	WP_000594580.1	type II secretion system minor pseudopilin GspJ	Machinery gene
PF364_RS08760 (PF364_08760)	gspK	1823071..1824030 (+)	960	WP_031960447.1	type II secretion system minor pseudopilin GspK	-
PF364_RS08765 (PF364_08765)	-	1824260..1824856 (+)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
PF364_RS08770 (PF364_08770)	ung	1824907..1825620 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
PF364_RS08775 (PF364_08775)	-	1825617..1826741 (+)	1125	WP_109067466.1	enoyl-CoA hydratase/isomerase family protein	-
PF364_RS08780 (PF364_08780)	tadA	1826748..1827251 (+)	504	WP_031960449.1	tRNA adenosine(34) deaminase TadA	-
PF364_RS08785 (PF364_08785)	-	1827321..1827764 (+)	444	WP_031960450.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26673.64 Da
• Isoelectric Point: 9.5501

>NTDB_id=772809 PF364_RS08755 WP_000594580.1 1822370..1823071(+) (xcpW) [Acinetobacter baumannii strain 2022CK-00480]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=772809 PF364_RS08755 WP_000594580.1 1822370..1823071(+) (xcpW) [Acinetobacter baumannii strain 2022CK-00480]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAAATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A836YMN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.712	100	0.987