Detailed information NTG0772809

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QQ475_RS18835
• Genome accession: NZ_CP127493
• Coordinates: 3885991..3886983 (-)
• Length: 330 a.a.
• NCBI ID: WP_001765075.1
• Uniprot ID: -
• Organism: Escherichia coli strain PS00260.4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3880991..3891983

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQ475_RS18815 (QQ475_18775)	otnK	3881766..3883028 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
QQ475_RS18820 (QQ475_18780)	ygbL	3883025..3883663 (+)	639	WP_001278994.1	aldolase	-
QQ475_RS18825 (QQ475_18785)	ygbM	3883668..3884444 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
QQ475_RS18830 (QQ475_18790)	ygbN	3884533..3885897 (+)	1365	WP_000104456.1	GntP family transporter	-
QQ475_RS18835 (QQ475_18795)	rpoS	3885991..3886983 (-)	993	WP_001765075.1	RNA polymerase sigma factor RpoS	Regulator
QQ475_RS18840 (QQ475_18800)	nlpD	3887046..3888140 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QQ475_RS18845 (QQ475_18805)	pcm	3888325..3888951 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QQ475_RS18850 (QQ475_18810)	surE	3888945..3889706 (-)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
QQ475_RS18855 (QQ475_18815)	truD	3889687..3890736 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QQ475_RS18860 (QQ475_18820)	ispF	3890733..3891212 (-)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QQ475_RS18865 (QQ475_18825)	ispD	3891212..3891922 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38030.88 Da
• Isoelectric Point: 4.5298

>NTDB_id=772809 QQ475_RS18835 WP_001765075.1 3885991..3886983(-) (rpoS) [Escherichia coli strain PS00260.4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEDLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=772809 QQ475_RS18835 WP_001765075.1 3885991..3886983(-) (rpoS) [Escherichia coli strain PS00260.4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGACCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712