Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QQ475_RS09770 Genome accession   NZ_CP127493
Coordinates   2013418..2014047 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain PS00260.4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2008418..2019047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ475_RS09750 (QQ475_09730) ycbZ 2008807..2010567 (-) 1761 WP_000156526.1 AAA family ATPase -
  QQ475_RS09755 (QQ475_09735) matP 2010753..2011205 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QQ475_RS09760 (QQ475_09740) ompA 2011281..2012333 (-) 1053 WP_001361736.1 porin OmpA -
  QQ475_RS09765 (QQ475_09745) sulA 2012690..2013199 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QQ475_RS09770 (QQ475_09750) sxy/tfoX 2013418..2014047 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QQ475_RS09775 (QQ475_09755) yccS 2014010..2016172 (-) 2163 WP_000875023.1 YccS family putative transporter -
  QQ475_RS09780 (QQ475_09760) yccF 2016182..2016628 (-) 447 WP_001261235.1 YccF domain-containing protein -
  QQ475_RS09785 (QQ475_09765) helD 2016751..2018805 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=772783 QQ475_RS09770 WP_000839153.1 2013418..2014047(+) (sxy/tfoX) [Escherichia coli strain PS00260.4]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=772783 QQ475_RS09770 WP_000839153.1 2013418..2014047(+) (sxy/tfoX) [Escherichia coli strain PS00260.4]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1