Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   PAN99_RS17030 Genome accession   NZ_CP115604
Coordinates   3452853..3453542 (-) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus velezensis strain FJAT-54560     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3447853..3458542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAN99_RS16995 (PAN99_16995) fliW 3447944..3448375 (-) 432 WP_060657507.1 flagellar assembly protein FliW -
  PAN99_RS17000 (PAN99_17000) - 3448405..3448974 (-) 570 WP_003151397.1 DUF6470 family protein -
  PAN99_RS17005 (PAN99_17005) flgL 3449065..3449982 (-) 918 WP_060657505.1 flagellar hook-associated protein FlgL -
  PAN99_RS17010 (PAN99_17010) flgK 3449994..3451511 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  PAN99_RS17015 (PAN99_17015) - 3451527..3452009 (-) 483 WP_003151394.1 flagellar protein FlgN -
  PAN99_RS17020 (PAN99_17020) flgM 3452024..3452290 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  PAN99_RS17025 (PAN99_17025) - 3452360..3452779 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  PAN99_RS17030 (PAN99_17030) comFC 3452853..3453542 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  PAN99_RS17035 (PAN99_17035) - 3453548..3453832 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  PAN99_RS17040 (PAN99_17040) comFA 3453890..3455275 (-) 1386 WP_044052858.1 DEAD/DEAH box helicase Machinery gene
  PAN99_RS17045 (PAN99_17045) - 3455383..3456231 (-) 849 WP_044052857.1 DegV family protein -
  PAN99_RS17050 (PAN99_17050) degU 3456329..3457018 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PAN99_RS17055 (PAN99_17055) degS 3457095..3458258 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=772751 PAN99_RS17030 WP_196616643.1 3452853..3453542(-) (comFC) [Bacillus velezensis strain FJAT-54560]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=772751 PAN99_RS17030 WP_196616643.1 3452853..3453542(-) (comFC) [Bacillus velezensis strain FJAT-54560]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAGGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGTTTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603