Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   PAN99_RS07195 Genome accession   NZ_CP115604
Coordinates   1373981..1374577 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain FJAT-54560     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1368981..1379577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAN99_RS07165 (PAN99_07165) - 1369195..1369650 (+) 456 WP_044053160.1 flavodoxin -
  PAN99_RS07170 (PAN99_07170) dapD 1369732..1370442 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  PAN99_RS07175 (PAN99_07175) - 1370513..1371637 (+) 1125 WP_014304923.1 N-acetyldiaminopimelate deacetylase -
  PAN99_RS07180 (PAN99_07180) - 1371698..1371943 (+) 246 WP_003154596.1 YkuS family protein -
  PAN99_RS07185 (PAN99_07185) - 1371977..1372783 (-) 807 WP_044053161.1 mechanosensitive ion channel family protein -
  PAN99_RS07190 (PAN99_07190) - 1373071..1373529 (+) 459 WP_024085241.1 TlpA disulfide reductase family protein -
  PAN99_RS07195 (PAN99_07195) rok 1373981..1374577 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  PAN99_RS07200 (PAN99_07200) - 1374598..1375590 (-) 993 WP_048367200.1 hypothetical protein -
  PAN99_RS07205 (PAN99_07205) - 1375736..1376338 (+) 603 WP_044053163.1 molybdenum cofactor guanylyltransferase -
  PAN99_RS07210 (PAN99_07210) - 1376390..1377409 (+) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  PAN99_RS07215 (PAN99_07215) glp 1377427..1378719 (+) 1293 WP_015388302.1 gephyrin-like molybdotransferase Glp -
  PAN99_RS07220 (PAN99_07220) mobB 1378680..1379201 (+) 522 WP_044053164.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=772716 PAN99_RS07195 WP_003154591.1 1373981..1374577(+) (rok) [Bacillus velezensis strain FJAT-54560]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=772716 PAN99_RS07195 WP_003154591.1 1373981..1374577(+) (rok) [Bacillus velezensis strain FJAT-54560]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843