Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IB212_RS07950 Genome accession   NZ_CP115601
Coordinates   1695665..1696291 (+) Length   208 a.a.
NCBI ID   WP_188245790.1    Uniprot ID   A0AAU7NEM6
Organism   Enterobacter sp. E12     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1690665..1701291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IB212_RS07930 (IB212_07910) - 1691066..1692826 (-) 1761 WP_188245789.1 Lon protease family protein -
  IB212_RS07935 (IB212_07915) matP 1693012..1693464 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  IB212_RS07940 (IB212_07920) ompA 1693528..1694583 (-) 1056 WP_108780329.1 porin OmpA -
  IB212_RS07945 (IB212_07925) sulA 1694938..1695447 (-) 510 WP_041910604.1 SOS-induced cell division inhibitor SulA -
  IB212_RS07950 (IB212_07930) sxy/tfoX 1695665..1696291 (+) 627 WP_188245790.1 TfoX/Sxy family DNA transformation protein Regulator
  IB212_RS07955 (IB212_07935) yccS 1696248..1698410 (-) 2163 WP_041910602.1 YccS family putative transporter -
  IB212_RS07960 (IB212_07940) - 1698430..1698876 (-) 447 WP_188245791.1 YccF domain-containing protein -
  IB212_RS07965 (IB212_07945) helD 1699000..1701054 (+) 2055 WP_045261704.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24046.65 Da        Isoelectric Point: 8.8764

>NTDB_id=772668 IB212_RS07950 WP_188245790.1 1695665..1696291(+) (sxy/tfoX) [Enterobacter sp. E12]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSEGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSTFALNAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARESWLKMREKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPLENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=772668 IB212_RS07950 WP_188245790.1 1695665..1696291(+) (sxy/tfoX) [Enterobacter sp. E12]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTGTCACCACTGGGTGAAATTCATCATCGCGCGCT
GTTCGGCGGCTATACCCTGGCAGTGGATGATGCGGTTTTTGCCATGGTGTCAGAAGGTGAGCTCTACCTCCGCGCCTGTG
AAGAAAGTGCGAAATACTGTGTGAAAAATGCCGCGTCTTTTTTGACCCTTATGAAGCGGGGCCGTCCGGTGCTTCTCAAC
TATTACCGGGTGGATGACGGGCTATGGCAGGACAGGGAGCGTCTGCTTCAGCTCTCCACTTTCGCACTTAATGCGGCAAG
AAAAGAGCGTTACCAGCGGCATCAGCGCAATCGACTTAAGGACCTGCCAAACCTGACCTTTCAGCTGGAAGTGTTGCTCT
TTGAAGCGGGCATCACCAACGAAGAAACACTGCGGGCGCTTGGCGCTAGGGAGAGCTGGCTGAAGATGCGGGAGAAAAAT
AAAGCGCTGAGTATCAAAGTGCTATTCGCGCTGGAAGGGGCGATCGAGGGGCTGCATGAGGCGGCACTCCCGGCCGGCAT
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACTGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.081

95.192

0.553