Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PDL12_RS15400 Genome accession   NZ_CP115484
Coordinates   3697001..3697450 (+) Length   149 a.a.
NCBI ID   WP_270165160.1    Uniprot ID   -
Organism   Paenibacillus sp. SYP-B4298     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3692001..3702450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDL12_RS15380 - 3692679..3693566 (+) 888 WP_270165153.1 AraC family transcriptional regulator -
  PDL12_RS15385 - 3693579..3694013 (-) 435 WP_270165155.1 N-acetyltransferase -
  PDL12_RS15390 - 3694205..3694807 (-) 603 WP_270165156.1 nitroreductase family protein -
  PDL12_RS15395 - 3695629..3696858 (+) 1230 WP_270165158.1 acetylornithine/succinylornithine family transaminase -
  PDL12_RS15400 nucA/comI 3697001..3697450 (+) 450 WP_270165160.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  PDL12_RS15405 - 3697661..3698002 (-) 342 WP_270165161.1 helix-turn-helix transcriptional regulator -
  PDL12_RS15435 - 3698819..3699295 (-) 477 WP_270172599.1 SprT family protein -
  PDL12_RS15440 - 3699426..3699788 (+) 363 WP_270165163.1 hydrolase/acyltransferase -
  PDL12_RS15445 cmpA 3699887..3700030 (+) 144 WP_270165165.1 cortex morphogenetic protein CmpA -
  PDL12_RS15450 - 3700178..3700816 (-) 639 WP_270165166.1 nitroreductase family protein -
  PDL12_RS15455 - 3701090..3701527 (-) 438 WP_270165168.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16654.42 Da        Isoelectric Point: 4.6752

>NTDB_id=772625 PDL12_RS15400 WP_270165160.1 3697001..3697450(+) (nucA/comI) [Paenibacillus sp. SYP-B4298]
MQFKKLIWVIVAAASVYLGVTTWSDWETPTPVYHEGDQQSYDVRLDFPSDRFPETASHISNAIKQGHSAICTIDRKGAEE
NRKRSLQGVPTKKGYDRDEWPMAMCAEGGDGADIEYISPSDNRGAGSWVGNKLESYENGTRVYFDVVAD

Nucleotide


Download         Length: 450 bp        

>NTDB_id=772625 PDL12_RS15400 WP_270165160.1 3697001..3697450(+) (nucA/comI) [Paenibacillus sp. SYP-B4298]
TTGCAGTTCAAGAAGCTGATATGGGTCATCGTCGCTGCCGCATCGGTATATCTGGGAGTCACCACTTGGTCAGACTGGGA
GACGCCGACACCTGTTTATCATGAGGGTGACCAGCAGAGCTATGATGTCAGGCTGGACTTCCCATCGGATCGTTTTCCAG
AGACTGCATCCCATATCTCCAATGCCATCAAGCAGGGCCACTCAGCCATCTGCACCATTGACCGTAAAGGCGCGGAGGAG
AACCGCAAGCGCTCATTGCAGGGGGTACCGACCAAGAAAGGCTATGATCGCGATGAATGGCCGATGGCGATGTGTGCGGA
AGGCGGAGACGGAGCTGACATTGAGTACATCAGCCCATCCGATAATCGCGGCGCAGGCTCATGGGTAGGCAATAAGCTGG
AGTCGTATGAGAACGGGACGAGAGTTTATTTTGATGTCGTCGCAGATTGA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(51-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.667

72.483

0.483