Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OQ289_RS00485 Genome accession   NZ_CP115483
Coordinates   105245..106630 (+) Length   461 a.a.
NCBI ID   WP_270088927.1    Uniprot ID   -
Organism   Sphingobacterium sp. SYP-B4668     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 100245..111630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQ289_RS00460 - 101052..101351 (-) 300 WP_033563762.1 helix-turn-helix transcriptional regulator -
  OQ289_RS00465 - 101523..101672 (+) 150 WP_270088923.1 molybdenum ABC transporter substrate-binding protein -
  OQ289_RS00470 - 101680..102342 (-) 663 WP_270088924.1 rhomboid family intramembrane serine protease -
  OQ289_RS00475 - 102409..102900 (+) 492 WP_270088925.1 hypothetical protein -
  OQ289_RS00480 - 102948..105104 (+) 2157 WP_270088926.1 peptidase domain-containing ABC transporter -
  OQ289_RS00485 radA 105245..106630 (+) 1386 WP_270088927.1 DNA repair protein RadA Machinery gene
  OQ289_RS00490 - 106664..107350 (-) 687 WP_270088928.1 TlpA disulfide reductase family protein -
  OQ289_RS00495 - 107606..110092 (+) 2487 WP_270088929.1 DUF5686 and carboxypeptidase regulatory-like domain-containing protein -
  OQ289_RS00500 - 110152..111303 (+) 1152 WP_270088930.1 methionine aminotransferase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50523.94 Da        Isoelectric Point: 6.6110

>NTDB_id=772605 OQ289_RS00485 WP_270088927.1 105245..106630(+) (radA) [Sphingobacterium sp. SYP-B4668]
MAKTKSAYFCQNCGYESPKWMGQCPSCKQWNSFVEEVVEKSSSKVPEWRSTTASATPKRANKAAIIHEIVYQDESRILTP
DHEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPQVKTLYISGEESEQQIKMRAERLSQSSMANCYILTETSTQ
NIFKQIEAVQPNVIVIDSIQTLHSSQIESAPGSVSQVRECTAELLRFAKETSTPVFIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSASELGIYEMQGSGLREVSNPSEIMLSQRDEPVSGVAIAAMLEGMRPMMIEVQALVSN
SAFGNAQRSSTGYDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVIVAIISSQQDMPIQSNLAFAGEV
GLSGEIRAVNRIEQRIAEAEKLGFDGVFISKFNTKGLDAKKYNIAIRPVAKLEDLFSALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=772605 OQ289_RS00485 WP_270088927.1 105245..106630(+) (radA) [Sphingobacterium sp. SYP-B4668]
ATGGCGAAAACTAAATCAGCATATTTCTGTCAAAACTGTGGATACGAATCCCCGAAATGGATGGGGCAGTGTCCTTCTTG
CAAACAGTGGAATTCTTTTGTCGAGGAAGTCGTCGAAAAGAGCAGTTCTAAAGTCCCCGAATGGCGGAGCACCACAGCTA
GTGCTACACCAAAGCGAGCAAATAAAGCTGCTATCATTCACGAGATCGTGTACCAAGATGAGTCGCGGATATTGACCCCG
GATCATGAATTTAACAGGGTGCTTGGTGGAGGGATTGTACCAGGGTCGTTAGTATTGATTGGGGGCGAACCTGGAATTGG
GAAGTCTACGTTGATGCTTCAATTGGCACTTTCCATTCCGCAGGTAAAGACGCTCTATATCTCCGGCGAGGAAAGCGAGC
AACAAATCAAAATGCGAGCGGAGCGGCTCTCGCAGTCTTCTATGGCCAATTGCTATATCCTGACCGAAACATCGACTCAA
AACATATTTAAACAGATAGAGGCCGTACAGCCCAATGTAATCGTTATCGATTCTATTCAGACATTACATTCATCGCAAAT
AGAGTCCGCGCCCGGGTCTGTCTCTCAGGTCAGGGAGTGCACCGCCGAATTGCTGCGATTTGCGAAGGAAACAAGTACGC
CCGTATTTATCGTTGGACACATCACTAAGGATGGCTCTATTGCTGGCCCTAAGGTATTGGAGCATATGGTCGATACGGTC
TTACAGTTTGAGGGCGATAGACACCATGTGTATCGCATATTGAGAGCGGTAAAAAACCGATTTGGATCTGCCTCGGAATT
AGGTATCTATGAAATGCAGGGGTCCGGACTCAGGGAAGTATCCAATCCTTCTGAAATAATGCTCTCTCAACGAGATGAGC
CCGTAAGTGGAGTCGCTATTGCCGCGATGCTTGAAGGAATGCGACCGATGATGATTGAAGTACAGGCCTTGGTCAGTAAT
TCAGCTTTCGGAAATGCTCAACGGTCATCCACAGGCTATGATACCAAGCGGCTCAACATGTTATTGGCCGTACTGGAAAA
GCGATTTGGATTCAGGTTGAGCGCGCAGGATGTATTTTTGAATATTGCAGGAGGACTTCGCGTCGAAGACCCGGCCATTG
ATCTGGCCGTTATCGTTGCTATTATCTCTTCACAACAGGATATGCCTATACAATCCAATTTAGCATTTGCTGGAGAGGTA
GGATTATCAGGTGAGATTAGAGCTGTAAACCGTATAGAGCAACGGATTGCTGAGGCTGAAAAACTTGGTTTTGATGGGGT
ATTTATTTCAAAATTCAATACCAAAGGACTTGATGCTAAGAAATATAATATTGCGATACGACCGGTCGCGAAATTAGAAG
ATCTCTTTAGCGCTTTATTTGGTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

54.176

96.095

0.521
  radA Streptococcus pneumoniae Rx1

51.193

100

0.512
  radA Streptococcus pneumoniae D39

51.193

100

0.512
  radA Streptococcus pneumoniae R6

51.193

100

0.512
  radA Streptococcus pneumoniae TIGR4

51.193

100

0.512
  radA Streptococcus mitis NCTC 12261

51.193

100

0.512
  radA Streptococcus mitis SK321

50.976

100

0.51